Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L03
         (503 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z99281-18|CAD56258.1|  380|Caenorhabditis elegans Hypothetical p...    28   3.3  
Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical pr...    28   3.3  
U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical p...    28   4.4  
U58752-3|AAB00666.1|  367|Caenorhabditis elegans Hypothetical pr...    27   5.8  
U41104-6|AAK77633.2|  419|Caenorhabditis elegans Hypothetical pr...    27   5.8  

>Z99281-18|CAD56258.1|  380|Caenorhabditis elegans Hypothetical
           protein Y57G11C.36 protein.
          Length = 380

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 10/21 (47%), Positives = 15/21 (71%)
 Frame = +3

Query: 30  HDNNTNGEVVKRDDVFYMMNV 92
           H NN +  + K DDVF+MM++
Sbjct: 282 HSNNNHSSMQKMDDVFHMMHM 302


>Z73103-4|CAA97426.1|  585|Caenorhabditis elegans Hypothetical
           protein C08F8.5 protein.
          Length = 585

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 14/45 (31%), Positives = 25/45 (55%), Gaps = 2/45 (4%)
 Frame = -2

Query: 130 LKTISFSASHSLHTFII*NTSSLFTT--SPFVLLSWNYTTCRGLV 2
           L   ++  S S+H F+I N ++LF+   SP+ L     + C+ L+
Sbjct: 425 LSNCTYETSQSIHKFLICNNATLFSNVFSPYNLNDLLISNCQNLL 469


>U64843-12|AAL08039.1|  492|Caenorhabditis elegans Hypothetical
           protein K06C4.9 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 4.4
 Identities = 12/42 (28%), Positives = 23/42 (54%)
 Frame = -1

Query: 143 IN*STKNYFFFCIPFITHVHHIKHIISLYYFSVCIIIMELYN 18
           IN  +K Y  F  P I  +HHI +++ + Y +  + I  +++
Sbjct: 397 INMVSKTYAQFRFPVIRVIHHISNLLLVIYSASTVFIYLIFS 438


>U58752-3|AAB00666.1|  367|Caenorhabditis elegans Hypothetical
           protein B0218.5 protein.
          Length = 367

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/22 (45%), Positives = 16/22 (72%)
 Frame = +1

Query: 181 ASGARLRD*TTPLPWHPRVPYL 246
           A+ ++++D T PL W P VPY+
Sbjct: 300 AAASKIKD-TDPLDWDPNVPYM 320


>U41104-6|AAK77633.2|  419|Caenorhabditis elegans Hypothetical
           protein T12C9.7 protein.
          Length = 419

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 15/42 (35%), Positives = 24/42 (57%)
 Frame = +3

Query: 87  NVCNEWDAEKEIVFS*LINCIVVKYLSFESRRERCAASRLNY 212
           NV +EWD E+E++ + +   +V    + +  RE C  SR NY
Sbjct: 360 NVKDEWDREREVMLTLIDLFLVAGDENHDIYREYC-TSRRNY 400


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,552,443
Number of Sequences: 27780
Number of extensions: 202700
Number of successful extensions: 645
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 645
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)