Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L02
(392 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein L2|Schizo... 101 5e-23
SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein L2|Schizo... 99 1e-22
SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr... 30 0.11
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 27 1.0
SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 27 1.4
SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyce... 25 3.2
SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr ... 25 3.2
SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces ... 25 3.2
SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subuni... 25 4.2
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 25 4.2
SPCC1753.03c |rec7||meiotic recombination protein Rec7 |Schizosa... 25 4.2
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 5.5
SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subun... 24 7.3
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi... 24 9.7
SPBP23A10.03c |||ACN9 family mitochondrial protein|Schizosacchar... 24 9.7
SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|... 24 9.7
SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces pombe... 24 9.7
>SPBP8B7.03c |rpl402|rpl4-2, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 101 bits (241), Expect = 5e-23
Identities = 51/118 (43%), Positives = 73/118 (61%), Gaps = 2/118 (1%)
Frame = +2
Query: 11 GIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMA 190
G+E+ APGGHLGRF+IWTKSAF LD +FGS ++ KKN+ LP+ ++
Sbjct: 226 GVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEAAQLKKNYFLPENIIS 285
Query: 191 NTDLSRLLKSEEIRKVLRAPN-KRVVRA-TRKLNPLTNTKAMLKLNPYAAVLRRKAVL 358
N D++RL+ S+EI+ +++A RV RA +K NPL N + +LNPYA + L
Sbjct: 286 NADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLARLNPYAKAYKANVKL 343
>SPBC1711.06 |rpl401|rpl4-1, rpl4|60S ribosomal protein
L2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 363
Score = 99 bits (238), Expect = 1e-22
Identities = 50/109 (45%), Positives = 71/109 (65%), Gaps = 2/109 (1%)
Frame = +2
Query: 11 GIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMA 190
G+E+ APGGHLGRF+IWTKSAF LD +FGS ++ KKN+ LP+ ++
Sbjct: 226 GVEIVNVRRLNLLQLAPGGHLGRFVIWTKSAFGLLDSVFGSTTEVAQLKKNYFLPENIIS 285
Query: 191 NTDLSRLLKSEEIRKVLRAPN-KRVVRA-TRKLNPLTNTKAMLKLNPYA 331
N D++RL+ S+EI+ +++A RV RA +K NPL N + +LNPYA
Sbjct: 286 NADVTRLINSDEIQSIVKAAGPSRVKRAHVQKKNPLKNKAVLSRLNPYA 334
>SPBC21.03c |||DUF55 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 239
Score = 30.3 bits (65), Expect = 0.11
Identities = 18/63 (28%), Positives = 37/63 (58%)
Frame = +2
Query: 197 DLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRKAVLEQVRRN 376
+LS+ + EEI K ++V + RKLN L++ + K +PY+++ A L+ ++R+
Sbjct: 169 ELSKQPEPEEIIKARLQEEEKVAKRKRKLN-LSDGENKAK-SPYSSISENDASLDIIKRS 226
Query: 377 NLR 385
++
Sbjct: 227 RIK 229
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 27.1 bits (57), Expect = 1.0
Identities = 17/51 (33%), Positives = 24/51 (47%)
Frame = +2
Query: 137 KTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNP 289
KTPS EK+ P P + N D L +E V + P+ + TR + P
Sbjct: 586 KTPSPEKQKVLSPPPIITNFDKETLASNEAHEAVPQKPS--APQVTRLMAP 634
Score = 24.2 bits (50), Expect = 7.3
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 166 QPAPAEDGQHRPQPSAEVRRDPQGPARAQQA 258
QP + Q P P E R P P++ Q A
Sbjct: 489 QPTEQSNAQQAPSPKEEERPLPSEPSQNQPA 519
>SPAC8C9.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 647
Score = 26.6 bits (56), Expect = 1.4
Identities = 13/33 (39%), Positives = 17/33 (51%)
Frame = +1
Query: 157 EELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQ 255
EE+Q ED H + E+ R + P RAQQ
Sbjct: 358 EEVQQTVQEDLPHPTAETVEIARFAEQPVRAQQ 390
>SPAC6G10.05c |||TRAPP complex subunit Trs120 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1210
Score = 25.4 bits (53), Expect = 3.2
Identities = 20/50 (40%), Positives = 26/50 (52%), Gaps = 4/50 (8%)
Frame = +2
Query: 116 DPLFGSWKTPSKEKKNFNLPQPKMANTDLSRL----LKSEEIRKVLRAPN 253
+PLF + KT S ++ L +PK N L RL + SEEI L PN
Sbjct: 971 EPLFVTVKTASTDESRSVLIKPKADNVILFRLKRFIMSSEEIN--LDIPN 1018
>SPBC9B6.03 |||zinc finger protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 293
Score = 25.4 bits (53), Expect = 3.2
Identities = 12/29 (41%), Positives = 17/29 (58%)
Frame = +2
Query: 143 PSKEKKNFNLPQPKMANTDLSRLLKSEEI 229
PS+ K ++P PKM +TD L SE +
Sbjct: 251 PSQPKNAVSVPIPKMDSTDSKGELPSESL 279
>SPCC126.02c |pku70||Ku domain protein Pku70|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 607
Score = 25.4 bits (53), Expect = 3.2
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 110 RLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLN 286
RL+ +W E+ +PQ K + + LK +EIR+ VV + +LN
Sbjct: 259 RLESAKTNWVYAKGERFAVAVPQSKQVSFATKKELKKDEIRRSYSYGGSSVVFGSDELN 317
>SPCC297.06c ||SPCC737.01c|mitochondrial ribosomal protein subunit
8|Schizosaccharomyces pombe|chr 3|||Manual
Length = 230
Score = 25.0 bits (52), Expect = 4.2
Identities = 13/58 (22%), Positives = 30/58 (51%)
Frame = +2
Query: 131 SWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTK 304
S+++ K+KK + + + + ++ RL + +E+R + NK+ + KL L +
Sbjct: 169 SFQSRLKQKKQRS--EFRASKREMERLERDQELRNKIEERNKKELETIEKLRELAKAR 224
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 25.0 bits (52), Expect = 4.2
Identities = 17/59 (28%), Positives = 29/59 (49%)
Frame = +2
Query: 149 KEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNP 325
K+K + + Q K L++ S E + VL +R T+K LTN+ ++K +P
Sbjct: 730 KQKAHLSADQCKQLANVLTQA--SPEAKTVLEQHRLSEMRKTKKQTELTNSAHVIKPSP 786
>SPCC1753.03c |rec7||meiotic recombination protein Rec7
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 339
Score = 25.0 bits (52), Expect = 4.2
Identities = 16/53 (30%), Positives = 26/53 (49%)
Frame = +2
Query: 95 KSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPN 253
K F++L +F K+ S EKK FN Q + N+ L+ + + + PN
Sbjct: 108 KVEFEKLGLVFKDAKS-SSEKKQFNNSQSQSNNSQELSLMNNAYNKSSAQQPN 159
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 24.6 bits (51), Expect = 5.5
Identities = 9/26 (34%), Positives = 13/26 (50%)
Frame = +1
Query: 175 PAEDGQHRPQPSAEVRRDPQGPARAQ 252
P+ +H+PQPS + D P Q
Sbjct: 596 PSFSSEHKPQPSLKTTTDVSSPETKQ 621
>SPBC11G11.05 |rpa34||DNA-directed RNA polymerase I complex subunit
Rpa34 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 251
Score = 24.2 bits (50), Expect = 7.3
Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = -2
Query: 124 QRVKPIESGLGPDDEP-AEMSAGCQ---LQEVQLVHVEHL 17
Q +PI +GP+ EP AE +G + LQE VE L
Sbjct: 173 QHFRPIGDAVGPESEPEAEPKSGIKEHILQETGDATVEEL 212
>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 749
Score = 23.8 bits (49), Expect = 9.7
Identities = 14/55 (25%), Positives = 24/55 (43%)
Frame = +2
Query: 134 WKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTN 298
+ TP+ NFN P + + L+ SE ++ N+RV N +T+
Sbjct: 682 YATPTSGLSNFNSVTPSSSASLYPPLIPSEARTPSVQPANRRVTTPVVNQNTVTS 736
>SPBP23A10.03c |||ACN9 family mitochondrial
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 115
Score = 23.8 bits (49), Expect = 9.7
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +2
Query: 131 SWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEI 229
SW+ + +N + Q K +NTDL L ++I
Sbjct: 66 SWERYADALENESWKQEKYSNTDLLESLNDQQI 98
>SPCC1672.12c |||DUF410 family protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 303
Score = 23.8 bits (49), Expect = 9.7
Identities = 15/49 (30%), Positives = 24/49 (48%), Gaps = 8/49 (16%)
Frame = +2
Query: 68 HLGRFIIWTKSAFDRLDP--------LFGSWKTPSKEKKNFNLPQPKMA 190
++ R + W+KSA + D +F WK P+ +K+F L K A
Sbjct: 102 YVKRLLEWSKSAGPQGDKDVHFAVATMFVKWKEPASAEKHFVLGNEKSA 150
>SPBC1711.07 |||WD repeat protein Rrb1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 23.8 bits (49), Expect = 9.7
Identities = 16/49 (32%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +1
Query: 235 GPARAQQACC*SDTEI-EPADQYEGDVEAEPVRRGAETEGGSRTGQEEQ 378
GP + DTE+ E D YE ++E+E A+ E + +EEQ
Sbjct: 17 GPGQRGTVADNVDTEMGEFEDAYEDEIESEEEYIEADGEKDNGMDEEEQ 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,351,026
Number of Sequences: 5004
Number of extensions: 24129
Number of successful extensions: 110
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 130061696
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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