Samia BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_L02
         (392 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein p...    29   0.061
AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcript...    27   0.25 
AY505417-1|AAR90328.1|  206|Anopheles gambiae superoxide dismuta...    25   0.99 
CR954256-8|CAJ14149.1|  247|Anopheles gambiae putative signal pe...    24   1.7  
AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein p...    23   3.0  
CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskel...    23   5.3  
AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal prot...    23   5.3  

>AB090819-1|BAC57913.1|  400|Anopheles gambiae gag-like protein
           protein.
          Length = 400

 Score = 29.1 bits (62), Expect = 0.061
 Identities = 19/59 (32%), Positives = 28/59 (47%), Gaps = 6/59 (10%)
 Frame = +2

Query: 128 GSWKTPSKEKKNFNLPQP------KMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLN 286
           G  K P K+KK  +LP+P      K  N DL+++LK       L+    +V +  R  N
Sbjct: 153 GQSKQPKKKKKKRSLPKPEAVVIEKCENIDLAKVLKGLTHDDALKDVGDQVAKVRRTQN 211


>AB090812-2|BAC57900.1| 1173|Anopheles gambiae reverse transcriptase
            protein.
          Length = 1173

 Score = 27.1 bits (57), Expect = 0.25
 Identities = 20/74 (27%), Positives = 28/74 (37%), Gaps = 1/74 (1%)
 Frame = +1

Query: 169  PAPAEDGQHRPQPSAEVR-RDPQGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAET 345
            P+P  + +      A  R R+ Q  ARA+            +D  + DVE       A T
Sbjct: 1083 PSPRTERRREVNRLAVARLRERQRAARAEMHGAYQPAPSNDSDDDDDDVENRQATNAAST 1142

Query: 346  EGGSRTGQEEQPEG 387
               +RT  EE   G
Sbjct: 1143 SEAARTAAEESRVG 1156



 Score = 24.6 bits (51), Expect = 1.3
 Identities = 10/31 (32%), Positives = 20/31 (64%), Gaps = 1/31 (3%)
 Frame = -2

Query: 367 DLFENRLPS-QHRGVRVQLQHRLRIGQRVQF 278
           DL E  L + +HR  + +L+  +++G+R +F
Sbjct: 336 DLQERSLAAAEHRTAKTRLEKAIKVGKRAEF 366



 Score = 21.8 bits (44), Expect = 9.2
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 110 RLDPLFGSWKTPSKEKKNFNLPQ 178
           RL P  G+W++    + NF+L Q
Sbjct: 915 RLIPDIGAWQSRKHGEVNFHLSQ 937


>AY505417-1|AAR90328.1|  206|Anopheles gambiae superoxide dismutase
           1 protein.
          Length = 206

 Score = 25.0 bits (52), Expect = 0.99
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 62  GGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKN 163
           GGH+   I W   + DR DP     K  +++ +N
Sbjct: 101 GGHINHSIFWKNLSPDRSDPSAELQKALNRDFQN 134


>CR954256-8|CAJ14149.1|  247|Anopheles gambiae putative signal
           peptidase protein.
          Length = 247

 Score = 24.2 bits (50), Expect = 1.7
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +2

Query: 230 RKVLRAPNKRVV-RATRKLNPLTNT 301
           ++++  P  R++ RA+  LNPL+NT
Sbjct: 82  KRIIGMPGDRIMTRASFNLNPLSNT 106


>AB090813-1|BAC57901.1|  724|Anopheles gambiae gag-like protein
           protein.
          Length = 724

 Score = 23.4 bits (48), Expect = 3.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = -2

Query: 376 VPPDLFENRLPSQHRGVRVQLQHRLRIGQRVQ 281
           VPP L + R   QH+  + Q Q + +  QR Q
Sbjct: 298 VPPQLRQQRQQQQHQQQQQQQQQQRQQQQRQQ 329


>CR954257-12|CAJ14163.1| 1645|Anopheles gambiae putative cytoskeletal
            structural protein protein.
          Length = 1645

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 9/21 (42%), Positives = 11/21 (52%)
 Frame = +1

Query: 190  QHRPQPSAEVRRDPQGPARAQ 252
            QH+P    E R   QGP+  Q
Sbjct: 981  QHKPSTILEFRPKHQGPSEVQ 1001


>AF079312-1|AAC28093.1|  271|Anopheles gambiae 60S ribosomal protein
           rpL7a protein.
          Length = 271

 Score = 22.6 bits (46), Expect = 5.3
 Identities = 13/50 (26%), Positives = 25/50 (50%)
 Frame = +2

Query: 149 KEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTN 298
           K  KN+ + Q      DLSR +K  +  ++ R  ++ +++   K+ P  N
Sbjct: 40  KRVKNYGIGQNVQPKRDLSRFVKWPKYIRIQR--HRAILQKRLKIPPPIN 87


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 350,511
Number of Sequences: 2352
Number of extensions: 6723
Number of successful extensions: 34
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 31
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34
length of database: 563,979
effective HSP length: 58
effective length of database: 427,563
effective search space used: 30784536
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)