Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L02
(392 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal pro... 105 1e-23
Z68338-4|CAE48509.1| 104|Caenorhabditis elegans Hypothetical pr... 31 0.22
U67967-1|AAC47829.1| 413|Caenorhabditis elegans PTL-1B protein ... 30 0.51
U67966-1|AAB97090.1| 453|Caenorhabditis elegans PTL-1A protein ... 30 0.51
U38983-1|AAA80687.1| 436|Caenorhabditis elegans TAU-1b protein. 30 0.51
U38982-1|AAA80686.1| 431|Caenorhabditis elegans TAU-1a protein. 30 0.51
U00051-4|AAK70645.1| 453|Caenorhabditis elegans Protein with ta... 30 0.51
U00051-3|AAK70647.1| 413|Caenorhabditis elegans Protein with ta... 30 0.51
U00051-2|AAK70646.1| 458|Caenorhabditis elegans Protein with ta... 30 0.51
Z69661-3|CAA93490.1| 293|Caenorhabditis elegans Hypothetical pr... 30 0.68
AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical ... 29 1.6
AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical ... 29 1.6
AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical ... 29 1.6
AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical ... 29 1.6
Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical pr... 28 2.1
U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical pr... 28 2.1
Z68338-3|CAA92760.2| 105|Caenorhabditis elegans Hypothetical pr... 27 3.6
AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian el... 27 6.3
Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein. 26 8.4
Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical p... 26 8.4
Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical pr... 26 8.4
Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical pr... 26 8.4
AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical ... 26 8.4
AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal pro... 26 8.4
>AF000196-2|AAC24253.1| 345|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 4 protein.
Length = 345
Score = 105 bits (252), Expect = 1e-23
Identities = 50/113 (44%), Positives = 72/113 (63%), Gaps = 1/113 (0%)
Frame = +2
Query: 11 GIEMXXXXXXXXXXXAPGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKE-KKNFNLPQPKM 187
G+++ APGGHLGR IIWT+SAF +LD ++G+ S + KK +++P P M
Sbjct: 225 GVDVMNVERLNLLKLAPGGHLGRLIIWTESAFKKLDTIYGTTVANSSQLKKGWSVPLPIM 284
Query: 188 ANTDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRR 346
AN+D SR+++SEE+ K +RAP K V NPL + KLNPYA++LR+
Sbjct: 285 ANSDFSRIIRSEEVVKAIRAPKKNPVLPKVHRNPLKKRTLLYKLNPYASILRK 337
>Z68338-4|CAE48509.1| 104|Caenorhabditis elegans Hypothetical
protein T24B8.3b protein.
Length = 104
Score = 31.5 bits (68), Expect = 0.22
Identities = 17/70 (24%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +1
Query: 172 APAEDGQHRPQPSAEVRRDPQGPARAQ-QACC*SDTEIEPADQYEGDVEAEPVRRGAETE 348
A E+G+ +P+ +V +D +G + + E+ D EG+ E G E
Sbjct: 29 ARIENGKTEEEPAEKVTKDAEGEEEGDDEDADDEEDEVNDEDSSEGEGEGSDAGEGEEGS 88
Query: 349 GGSRTGQEEQ 378
G G+E +
Sbjct: 89 GDDEDGEEAE 98
>U67967-1|AAC47829.1| 413|Caenorhabditis elegans PTL-1B protein
protein.
Length = 413
Score = 30.3 bits (65), Expect = 0.51
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 148 EGEEELQPAPAEDGQHRPQPSAEVRRDPQ-GPARAQQACC*SDTEIEPADQYEGDVEAEP 324
E E E +P P + + P+P EV PQ P Q + E+EP + E E EP
Sbjct: 45 EPEPEPEPEPEPEPEPEPKPKPEVEPVPQPEPEPEYQPEPEPEPEVEPEPEPEPVPEPEP 104
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 136 EDTIEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVE 315
E +E E E +P P + + P+P E P+ P + E +P + E +VE
Sbjct: 33 EVAVEPEPEPEPEPEPEPEPEPEPEPEPEPKPK-PEVEPVPQPEPEPEYQPEPEPEPEVE 91
Query: 316 AEP 324
EP
Sbjct: 92 PEP 94
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 133 VEDTIEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDV 312
VE E E E +P P + + P+P + + + + P + E EP + E +
Sbjct: 36 VEPEPEPEPEPEPEPEPEPEPEPEPEPKPKPEVE-PVPQPEPEPEYQPEPEPEPEVEPEP 94
Query: 313 EAEPV 327
E EPV
Sbjct: 95 EPEPV 99
>U67966-1|AAB97090.1| 453|Caenorhabditis elegans PTL-1A protein
protein.
Length = 453
Score = 30.3 bits (65), Expect = 0.51
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 148 EGEEELQPAPAEDGQHRPQPSAEVRRDPQ-GPARAQQACC*SDTEIEPADQYEGDVEAEP 324
E E E +P P + + P+P EV PQ P Q + E+EP + E E EP
Sbjct: 45 EPEPEPEPEPEPEPEPEPKPKPEVEPVPQPEPEPEYQPEPEPEPEVEPEPEPEPVPEPEP 104
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 136 EDTIEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVE 315
E +E E E +P P + + P+P E P+ P + E +P + E +VE
Sbjct: 33 EVAVEPEPEPEPEPEPEPEPEPEPEPEPEPKPK-PEVEPVPQPEPEPEYQPEPEPEPEVE 91
Query: 316 AEP 324
EP
Sbjct: 92 PEP 94
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 133 VEDTIEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDV 312
VE E E E +P P + + P+P + + + + P + E EP + E +
Sbjct: 36 VEPEPEPEPEPEPEPEPEPEPEPEPEPKPKPEVE-PVPQPEPEPEYQPEPEPEPEVEPEP 94
Query: 313 EAEPV 327
E EPV
Sbjct: 95 EPEPV 99
>U38983-1|AAA80687.1| 436|Caenorhabditis elegans TAU-1b protein.
Length = 436
Score = 30.3 bits (65), Expect = 0.51
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 148 EGEEELQPAPAEDGQHRPQPSAEVRRDPQ-GPARAQQACC*SDTEIEPADQYEGDVEAEP 324
E E E +P P + + P+P EV PQ P Q + E+EP + E E EP
Sbjct: 23 EPEPEPEPEPEPEPEPEPKPKPEVEPVPQPEPEPEYQPEPEPEPEVEPEPEPEPVPEPEP 82
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 136 EDTIEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVE 315
E +E E E +P P + + P+P E P+ P + E +P + E +VE
Sbjct: 11 EVAVEPEPEPEPEPEPEPEPEPEPEPEPEPKPK-PEVEPVPQPEPEPEYQPEPEPEPEVE 69
Query: 316 AEP 324
EP
Sbjct: 70 PEP 72
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 133 VEDTIEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDV 312
VE E E E +P P + + P+P + + + + P + E EP + E +
Sbjct: 14 VEPEPEPEPEPEPEPEPEPEPEPEPEPKPKPEVE-PVPQPEPEPEYQPEPEPEPEVEPEP 72
Query: 313 EAEPV 327
E EPV
Sbjct: 73 EPEPV 77
>U38982-1|AAA80686.1| 431|Caenorhabditis elegans TAU-1a protein.
Length = 431
Score = 30.3 bits (65), Expect = 0.51
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 148 EGEEELQPAPAEDGQHRPQPSAEVRRDPQ-GPARAQQACC*SDTEIEPADQYEGDVEAEP 324
E E E +P P + + P+P EV PQ P Q + E+EP + E E EP
Sbjct: 23 EPEPEPEPEPEPEPEPEPKPKPEVEPVPQPEPEPEYQPEPEPEPEVEPEPEPEPVPEPEP 82
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 136 EDTIEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVE 315
E +E E E +P P + + P+P E P+ P + E +P + E +VE
Sbjct: 11 EVAVEPEPEPEPEPEPEPEPEPEPEPEPEPKPK-PEVEPVPQPEPEPEYQPEPEPEPEVE 69
Query: 316 AEP 324
EP
Sbjct: 70 PEP 72
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 133 VEDTIEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDV 312
VE E E E +P P + + P+P + + + + P + E EP + E +
Sbjct: 14 VEPEPEPEPEPEPEPEPEPEPEPEPEPKPKPEVE-PVPQPEPEPEYQPEPEPEPEVEPEP 72
Query: 313 EAEPV 327
E EPV
Sbjct: 73 EPEPV 77
>U00051-4|AAK70645.1| 453|Caenorhabditis elegans Protein with
tau-like repeats protein1, isoform a protein.
Length = 453
Score = 30.3 bits (65), Expect = 0.51
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 148 EGEEELQPAPAEDGQHRPQPSAEVRRDPQ-GPARAQQACC*SDTEIEPADQYEGDVEAEP 324
E E E +P P + + P+P EV PQ P Q + E+EP + E E EP
Sbjct: 45 EPEPEPEPEPEPEPEPEPKPKPEVEPVPQPEPEPEYQPEPEPEPEVEPEPEPEPVPEPEP 104
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 136 EDTIEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVE 315
E +E E E +P P + + P+P E P+ P + E +P + E +VE
Sbjct: 33 EVAVEPEPEPEPEPEPEPEPEPEPEPEPEPKPK-PEVEPVPQPEPEPEYQPEPEPEPEVE 91
Query: 316 AEP 324
EP
Sbjct: 92 PEP 94
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 133 VEDTIEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDV 312
VE E E E +P P + + P+P + + + + P + E EP + E +
Sbjct: 36 VEPEPEPEPEPEPEPEPEPEPEPEPEPKPKPEVE-PVPQPEPEPEYQPEPEPEPEVEPEP 94
Query: 313 EAEPV 327
E EPV
Sbjct: 95 EPEPV 99
>U00051-3|AAK70647.1| 413|Caenorhabditis elegans Protein with
tau-like repeats protein1, isoform c protein.
Length = 413
Score = 30.3 bits (65), Expect = 0.51
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 148 EGEEELQPAPAEDGQHRPQPSAEVRRDPQ-GPARAQQACC*SDTEIEPADQYEGDVEAEP 324
E E E +P P + + P+P EV PQ P Q + E+EP + E E EP
Sbjct: 45 EPEPEPEPEPEPEPEPEPKPKPEVEPVPQPEPEPEYQPEPEPEPEVEPEPEPEPVPEPEP 104
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 136 EDTIEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVE 315
E +E E E +P P + + P+P E P+ P + E +P + E +VE
Sbjct: 33 EVAVEPEPEPEPEPEPEPEPEPEPEPEPEPKPK-PEVEPVPQPEPEPEYQPEPEPEPEVE 91
Query: 316 AEP 324
EP
Sbjct: 92 PEP 94
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 133 VEDTIEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDV 312
VE E E E +P P + + P+P + + + + P + E EP + E +
Sbjct: 36 VEPEPEPEPEPEPEPEPEPEPEPEPEPKPKPEVE-PVPQPEPEPEYQPEPEPEPEVEPEP 94
Query: 313 EAEPV 327
E EPV
Sbjct: 95 EPEPV 99
>U00051-2|AAK70646.1| 458|Caenorhabditis elegans Protein with
tau-like repeats protein1, isoform b protein.
Length = 458
Score = 30.3 bits (65), Expect = 0.51
Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
Frame = +1
Query: 148 EGEEELQPAPAEDGQHRPQPSAEVRRDPQ-GPARAQQACC*SDTEIEPADQYEGDVEAEP 324
E E E +P P + + P+P EV PQ P Q + E+EP + E E EP
Sbjct: 45 EPEPEPEPEPEPEPEPEPKPKPEVEPVPQPEPEPEYQPEPEPEPEVEPEPEPEPVPEPEP 104
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/63 (28%), Positives = 28/63 (44%)
Frame = +1
Query: 136 EDTIEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVE 315
E +E E E +P P + + P+P E P+ P + E +P + E +VE
Sbjct: 33 EVAVEPEPEPEPEPEPEPEPEPEPEPEPEPKPK-PEVEPVPQPEPEPEYQPEPEPEPEVE 91
Query: 316 AEP 324
EP
Sbjct: 92 PEP 94
Score = 27.1 bits (57), Expect = 4.8
Identities = 18/65 (27%), Positives = 29/65 (44%)
Frame = +1
Query: 133 VEDTIEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDV 312
VE E E E +P P + + P+P + + + + P + E EP + E +
Sbjct: 36 VEPEPEPEPEPEPEPEPEPEPEPEPEPKPKPEVE-PVPQPEPEPEYQPEPEPEPEVEPEP 94
Query: 313 EAEPV 327
E EPV
Sbjct: 95 EPEPV 99
>Z69661-3|CAA93490.1| 293|Caenorhabditis elegans Hypothetical
protein F48F7.5 protein.
Length = 293
Score = 29.9 bits (64), Expect = 0.68
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 1/61 (1%)
Frame = +1
Query: 145 IEGEEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGD-VEAE 321
+E E+E + A ++G+ ++V + + ++ DTE E D+YE D VE E
Sbjct: 214 VEEEDEDEEADDDNGESTDLEGSDVDENREEKELIDESNDSDDTEFEEEDEYETDYVEDE 273
Query: 322 P 324
P
Sbjct: 274 P 274
>AF026205-6|AAM69068.1| 908|Caenorhabditis elegans Hypothetical
protein T23E7.2e protein.
Length = 908
Score = 28.7 bits (61), Expect = 1.6
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = +1
Query: 163 LQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAE 342
++P P E P+P AE +P+ A A+ E EPA + E E EP
Sbjct: 493 VEPEP-EPVAEEPEPVAEPEPEPEPVAEAEP-------EAEPAVEEEPAEEPEPAADETA 544
Query: 343 TEGGSRTGQEEQPE 384
TE T +E +PE
Sbjct: 545 TE---PTAEEAEPE 555
>AF026205-5|AAB71258.1| 880|Caenorhabditis elegans Hypothetical
protein T23E7.2b protein.
Length = 880
Score = 28.7 bits (61), Expect = 1.6
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = +1
Query: 163 LQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAE 342
++P P E P+P AE +P+ A A+ E EPA + E E EP
Sbjct: 443 VEPEP-EPVAEEPEPVAEPEPEPEPVAEAEP-------EAEPAVEEEPAEEPEPAADETA 494
Query: 343 TEGGSRTGQEEQPE 384
TE T +E +PE
Sbjct: 495 TE---PTAEEAEPE 505
>AF026205-4|AAD47129.1| 885|Caenorhabditis elegans Hypothetical
protein T23E7.2c protein.
Length = 885
Score = 28.7 bits (61), Expect = 1.6
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = +1
Query: 163 LQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAE 342
++P P E P+P AE +P+ A A+ E EPA + E E EP
Sbjct: 493 VEPEP-EPVAEEPEPVAEPEPEPEPVAEAEP-------EAEPAVEEEPAEEPEPAADETA 544
Query: 343 TEGGSRTGQEEQPE 384
TE T +E +PE
Sbjct: 545 TE---PTAEEAEPE 555
>AF026205-3|AAB71257.1| 930|Caenorhabditis elegans Hypothetical
protein T23E7.2a protein.
Length = 930
Score = 28.7 bits (61), Expect = 1.6
Identities = 24/74 (32%), Positives = 33/74 (44%)
Frame = +1
Query: 163 LQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVEAEPVRRGAE 342
++P P E P+P AE +P+ A A+ E EPA + E E EP
Sbjct: 493 VEPEP-EPVAEEPEPVAEPEPEPEPVAEAEP-------EAEPAVEEEPAEEPEPAADETA 544
Query: 343 TEGGSRTGQEEQPE 384
TE T +E +PE
Sbjct: 545 TE---PTAEEAEPE 555
>Z49888-1|CAA90064.1| 3498|Caenorhabditis elegans Hypothetical protein
F47A4.2 protein.
Length = 3498
Score = 28.3 bits (60), Expect = 2.1
Identities = 15/77 (19%), Positives = 37/77 (48%)
Frame = +1
Query: 154 EEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVEAEPVRR 333
+ ++ + Q+R +A++++ P A+ QQ ++ + Y ++ + VR+
Sbjct: 3377 QSQISQQQQQQDQYRRMQAAQMQQQPT--AQGQQNRMGMPSQQQSGAAYSNQMQFQGVRQ 3434
Query: 334 GAETEGGSRTGQEEQPE 384
G + GG ++QP+
Sbjct: 3435 GQQGMGGMGGSGQQQPQ 3451
>U23181-6|AAC48204.1| 801|Caenorhabditis elegans Hypothetical
protein ZK84.1 protein.
Length = 801
Score = 28.3 bits (60), Expect = 2.1
Identities = 25/79 (31%), Positives = 31/79 (39%)
Frame = +1
Query: 154 EEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVEAEPVRR 333
EE PAPA + P P+AE P PA A+ A ++ PA E E +
Sbjct: 630 EETPAPAPAVEETPAPAPAAEETPAP-APAAAEYAAPVAEETPAPAPAAE---ETPAPAQ 685
Query: 334 GAETEGGSRTGQEEQPEGA 390
AE EE P A
Sbjct: 686 AAEETPAPAPAAEETPASA 704
Score = 26.2 bits (55), Expect = 8.4
Identities = 21/73 (28%), Positives = 26/73 (35%)
Frame = +1
Query: 154 EEELQPAPAEDGQHRPQPSAEVRRDPQGPARAQQACC*SDTEIEPADQYEGDVEAEPVRR 333
EE PAPA D P P+AE P PA + E PA + P
Sbjct: 550 EETPAPAPAADETPAPAPAAEETPAP-APAAEETPAPAPAAEETPATAPAAEETPAPAPA 608
Query: 334 GAETEGGSRTGQE 372
ET + +E
Sbjct: 609 ADETPAPAPAAEE 621
>Z68338-3|CAA92760.2| 105|Caenorhabditis elegans Hypothetical
protein T24B8.3a protein.
Length = 105
Score = 27.5 bits (58), Expect = 3.6
Identities = 17/71 (23%), Positives = 30/71 (42%), Gaps = 2/71 (2%)
Frame = +1
Query: 172 APAEDGQHRPQPSAEV-RRDPQGPARAQ-QACC*SDTEIEPADQYEGDVEAEPVRRGAET 345
A E+G+ +P+ +V + D +G + + E+ D EG+ E G E
Sbjct: 29 ARIENGKTEEEPAEKVTKEDAEGEEEGDDEDADDEEDEVNDEDSSEGEGEGSDAGEGEEG 88
Query: 346 EGGSRTGQEEQ 378
G G+E +
Sbjct: 89 SGDDEDGEEAE 99
>AF038613-11|AAB92054.2| 836|Caenorhabditis elegans Mammalian
elks/cast/erc/rab6 interactingprotein homolog protein 1
protein.
Length = 836
Score = 26.6 bits (56), Expect = 6.3
Identities = 11/26 (42%), Positives = 14/26 (53%)
Frame = +1
Query: 25 QREQAEPPEAGTRRTSRQVHHLDQVR 102
++E E E G R R H+DQVR
Sbjct: 486 EKEMTEKIEQGERERQRLAEHIDQVR 511
>Z99267-1|CAB16465.1| 732|Caenorhabditis elegans C33A12.12 protein.
Length = 732
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = +2
Query: 194 TDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRK 349
T+++ LLK +EIR++ N R ++ + LN +++M ++ +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600
>Z68493-14|CAA92801.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = +2
Query: 194 TDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRK 349
T+++ LLK +EIR++ N R ++ + LN +++M ++ +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600
>Z48583-4|CAN99691.1| 3394|Caenorhabditis elegans Hypothetical protein
F54B3.1b protein.
Length = 3394
Score = 26.2 bits (55), Expect = 8.4
Identities = 18/81 (22%), Positives = 32/81 (39%)
Frame = +2
Query: 74 GRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPN 253
G F+ T F +TP + +N P+ A +++ +IR +L P
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848
Query: 254 KRVVRATRKLNPLTNTKAMLK 316
K V ++ TK ++K
Sbjct: 2849 KEFVE-IYEVQKAKMTKQLMK 2868
>Z48583-3|CAA88472.1| 3396|Caenorhabditis elegans Hypothetical protein
F54B3.1a protein.
Length = 3396
Score = 26.2 bits (55), Expect = 8.4
Identities = 18/81 (22%), Positives = 32/81 (39%)
Frame = +2
Query: 74 GRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKVLRAPN 253
G F+ T F +TP + +N P+ A +++ +IR +L P
Sbjct: 2789 GEFLKKTDLKLGLASTKFHEIRTPFFLRSEWNKDAPRRAGKLFDEVVRESDIRSILEEPL 2848
Query: 254 KRVVRATRKLNPLTNTKAMLK 316
K V ++ TK ++K
Sbjct: 2849 KEFVE-IYEVQKAKMTKQLMK 2868
>AL033537-1|CAA22147.1| 732|Caenorhabditis elegans Hypothetical
protein C33A12.12 protein.
Length = 732
Score = 26.2 bits (55), Expect = 8.4
Identities = 14/52 (26%), Positives = 30/52 (57%)
Frame = +2
Query: 194 TDLSRLLKSEEIRKVLRAPNKRVVRATRKLNPLTNTKAMLKLNPYAAVLRRK 349
T+++ LLK +EIR++ N R ++ + LN +++M ++ +L R+
Sbjct: 551 TNIAILLKYDEIREIFTDENSRTIK--QMLNKFDVSRSMHVISLLTLILSRE 600
>AC024780-6|AAF60569.1| 259|Caenorhabditis elegans Ribosomal
protein, small subunitprotein 4 protein.
Length = 259
Score = 26.2 bits (55), Expect = 8.4
Identities = 21/75 (28%), Positives = 29/75 (38%)
Frame = +2
Query: 59 PGGHLGRFIIWTKSAFDRLDPLFGSWKTPSKEKKNFNLPQPKMANTDLSRLLKSEEIRKV 238
P HL R + D+L +F P K +LP L L E +K+
Sbjct: 4 PKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKI 63
Query: 239 LRAPNKRVVRATRKL 283
L +RVVR K+
Sbjct: 64 L---TQRVVRVDGKV 75
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,772,405
Number of Sequences: 27780
Number of extensions: 149241
Number of successful extensions: 898
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 803
length of database: 12,740,198
effective HSP length: 74
effective length of database: 10,684,478
effective search space used: 598330768
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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