Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_L01
(307 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch... 165 1e-42
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc... 165 1e-42
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S... 27 0.47
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual 27 0.82
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr... 26 1.4
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 26 1.4
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom... 25 2.5
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po... 25 2.5
SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces pom... 25 3.3
SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces pomb... 25 3.3
SPAC977.05c |||conserved fungal protein|Schizosaccharomyces pomb... 25 3.3
SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|c... 25 3.3
SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces pomb... 24 4.4
SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase Sen1|... 24 5.8
SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces ... 23 7.7
SPAC26A3.08 |smb1|smb|Sm snRNP core protein Smb1|Schizosaccharom... 23 7.7
>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 1|||Manual
Length = 221
Score = 165 bits (402), Expect = 1e-42
Identities = 72/93 (77%), Positives = 81/93 (87%)
Frame = +2
Query: 29 MGRRPARCYRYCKIKPYPKSRFGRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
M RRPARCYRYCK KPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHP 307
+SEALEA RIC NKYLVK GKD FH+R+R HP
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHP 93
>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
L10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 221
Score = 165 bits (402), Expect = 1e-42
Identities = 72/93 (77%), Positives = 81/93 (87%)
Frame = +2
Query: 29 MGRRPARCYRYCKIKPYPKSRFGRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 208
M RRPARCYRYCK KPYPKSR+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ+
Sbjct: 1 MARRPARCYRYCKNKPYPKSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQI 60
Query: 209 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHP 307
+SEALEA RIC NKYLVK GKD FH+R+R HP
Sbjct: 61 TSEALEAARICANKYLVKIGGKDSFHLRVRAHP 93
>SPCC1827.04 |||ankyrin repeat protein, unknown biological
role|Schizosaccharomyces pombe|chr 3|||Manual
Length = 600
Score = 27.5 bits (58), Expect = 0.47
Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +2
Query: 110 DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 229
DPK+R+F KRAT + C LV+ + + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360
>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 405
Score = 26.6 bits (56), Expect = 0.82
Identities = 13/39 (33%), Positives = 23/39 (58%)
Frame = +2
Query: 116 KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAG 232
KI + +KRA +D LC+ +S + E ++ +LE+G
Sbjct: 56 KISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESG 94
>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 1060
Score = 25.8 bits (54), Expect = 1.4
Identities = 16/40 (40%), Positives = 22/40 (55%)
Frame = -3
Query: 224 PAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQA 105
P P +S+ R Q+LSA + S+P S PS GSL +
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANS 510
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 25.8 bits (54), Expect = 1.4
Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Frame = +2
Query: 131 DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 274
++ KKRA DD + +VS EYE L SS+ ++ N KY+ KN K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085
>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1016
Score = 25.0 bits (52), Expect = 2.5
Identities = 10/26 (38%), Positives = 14/26 (53%)
Frame = +2
Query: 8 GRFVENTMGRRPARCYRYCKIKPYPK 85
G F++N G + C+ C K YPK
Sbjct: 423 GEFLKNAAGMQCIDCHYTCHKKCYPK 448
>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 374
Score = 25.0 bits (52), Expect = 2.5
Identities = 9/25 (36%), Positives = 15/25 (60%)
Frame = -1
Query: 169 WEVIHCRSLFAQVENTDLWVRHTPT 95
+ ++H +LFA EN D ++ PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367
>SPBC1348.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 24.6 bits (51), Expect = 3.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 79 IRFNLTISITSRWSAPHC 26
IRFNLT SR PHC
Sbjct: 17 IRFNLTDLECSRLRGPHC 34
>SPBPB2B2.15 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 203
Score = 24.6 bits (51), Expect = 3.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 79 IRFNLTISITSRWSAPHC 26
IRFNLT SR PHC
Sbjct: 17 IRFNLTDLECSRLRGPHC 34
>SPAC977.05c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 204
Score = 24.6 bits (51), Expect = 3.3
Identities = 11/18 (61%), Positives = 11/18 (61%)
Frame = -1
Query: 79 IRFNLTISITSRWSAPHC 26
IRFNLT SR PHC
Sbjct: 18 IRFNLTDLECSRLRGPHC 35
>SPAC14C4.12c |||SWIRM domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 3.3
Identities = 7/12 (58%), Positives = 9/12 (75%)
Frame = +3
Query: 135 WAKRERQWMTSH 170
W +RERQW+ H
Sbjct: 91 WLRRERQWLQRH 102
>SPCC1322.06 |kap113||karyopherin Kap113|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 983
Score = 24.2 bits (50), Expect = 4.4
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = +3
Query: 66 RLNRILNLGLVGVCLTQRSVFSTWAKRERQWM 161
R+N +L+L + + + + F W +QW+
Sbjct: 376 RINNLLDLLITKLLILKEEDFEEWTDSPQQWV 407
>SPAC6G9.10c |sen1||ATP-dependent 5' to 3' DNA/RNA helicase
Sen1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1687
Score = 23.8 bits (49), Expect = 5.8
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +2
Query: 200 EQLSSEALEAGRICCN 247
E LSS+ + RICCN
Sbjct: 262 ESLSSQQMSCLRICCN 277
>SPAC22H10.04 |||protein phosphatase type 2A|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 307
Score = 23.4 bits (48), Expect = 7.7
Identities = 10/19 (52%), Positives = 11/19 (57%)
Frame = +2
Query: 125 IFDLGKKRATVDDFPLCVH 181
IFD AT+DD CVH
Sbjct: 143 IFDFLTLSATIDDTIFCVH 161
>SPAC26A3.08 |smb1|smb|Sm snRNP core protein
Smb1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 147
Score = 23.4 bits (48), Expect = 7.7
Identities = 9/17 (52%), Positives = 10/17 (58%)
Frame = +2
Query: 74 PYPKSRFGRGVPDPKIR 124
P P + FGRG P P R
Sbjct: 129 PPPPAGFGRGAPPPGFR 145
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,378,277
Number of Sequences: 5004
Number of extensions: 26370
Number of successful extensions: 85
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 77794588
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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