Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K24
         (480 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12 |Schiz...    27   1.5  
SPCC1183.11 ||SPCC31H12.01|MS ion channel protein 1|Schizosaccha...    26   3.4  
SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces pomb...    25   4.5  
SPBC1773.08c |||mannosyltransferase complex subunit |Schizosacch...    25   4.5  
SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak...    25   4.5  
SPAC2F7.03c |pom1||DYRK family protein kinase Pom1|Schizosacchar...    25   5.9  
SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces ...    25   7.8  
SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual         25   7.8  

>SPCC736.04c |gma12||alpha-1,2-galactosyltransferase Gma12
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 375

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 13/37 (35%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
 Frame = +3

Query: 372 DTNLWFYP*INCCIHSTFCT-FVYCPTNALEWLKATS 479
           D N+W Y   + CIH   C  F  CP   L++ +  S
Sbjct: 315 DDNIWGYDDGDLCIHFAGCNYFKNCPEKFLKYAQILS 351


>SPCC1183.11 ||SPCC31H12.01|MS ion channel protein
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1011

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 8/22 (36%), Positives = 13/22 (59%)
 Frame = +1

Query: 112 WISLLWRH*WSSAWTARSTARL 177
           W+++ W   W S W AR  A++
Sbjct: 271 WMAIWWEIIWLSIWAARYAAKV 292


>SPCC1322.09 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 455

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -2

Query: 467 QPLQRIRRTINKSTECGMNTTIN 399
           QP Q  + TINK+TE     T+N
Sbjct: 95  QPSQAAQTTINKNTESATPKTVN 117


>SPBC1773.08c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 391

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = -3

Query: 394 G*NHKFVSHCLQTKIGDMPPIKLISEFKETVGGCKLQ 284
           G  H  + HC Q+   +   I  +SE + T GGC  Q
Sbjct: 343 GYRHSDIHHCGQSLGCNCECIPELSEIESTSGGCVTQ 379


>SPBC1861.03 |mak10||NatC N-acetyltransferase complex subunit Mak10
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +2

Query: 5   EVFLCCAHVFSVC 43
           E  LC AHVFS+C
Sbjct: 122 ESLLCSAHVFSIC 134


>SPAC2F7.03c |pom1||DYRK family protein kinase
           Pom1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1087

 Score = 25.0 bits (52), Expect = 5.9
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 63  SSQENSPHTLKTCAQHKKTS 4
           SSQ+N+P +L T + H+ +S
Sbjct: 156 SSQQNNPSSLNTSSHHRTSS 175


>SPCC622.13c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1098

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +1

Query: 139 WSSAWTARSTARLNTNKLED 198
           WS+ W++ ST     NKLE+
Sbjct: 380 WSTTWSSVSTFASEDNKLEE 399


>SPCC1450.15 |||pig-F |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 503

 Score = 24.6 bits (51), Expect = 7.8
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = +2

Query: 404 LLYSFHILYFCLLS 445
           LL+ FH+ YFC L+
Sbjct: 403 LLHDFHLTYFCALT 416


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,096,079
Number of Sequences: 5004
Number of extensions: 42125
Number of successful extensions: 103
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 184020746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)