Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_K23
(330 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr 2|... 29 0.24
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ... 27 0.56
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 1.3
SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces pomb... 25 2.2
SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces pom... 25 3.0
SPBC2F12.05c |||sterol binding ankyrin repeat protein|Schizosacc... 25 3.9
SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual 24 5.2
SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr 1||... 24 5.2
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 24 6.8
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 24 6.8
SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|c... 24 6.8
SPAC23D3.07 |pup1||20S proteasome component beta 2|Schizosacchar... 24 6.8
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 23 9.0
SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat protei... 23 9.0
SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomy... 23 9.0
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual 23 9.0
>SPBC14C8.07c |cdc18||MCM loader|Schizosaccharomyces pombe|chr
2|||Manual
Length = 577
Score = 28.7 bits (61), Expect = 0.24
Identities = 16/64 (25%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +2
Query: 14 PGTPERNSYSPVSSAALHEYWSSMSAVTENDELDLISDYNDTLFDILL-NTLSIDGANGS 190
P TP SY+ + +L + + S V +E ++ + D L + GA G+
Sbjct: 144 PSTPSTPSYNSTAKLSLRKSYRSAGVVGRENEKSIVESFFRQHLDANAGGALYVSGAPGT 203
Query: 191 GEAV 202
G+ V
Sbjct: 204 GKTV 207
>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1044
Score = 27.5 bits (58), Expect = 0.56
Identities = 16/52 (30%), Positives = 26/52 (50%)
Frame = +2
Query: 23 PERNSYSPVSSAALHEYWSSMSAVTENDELDLISDYNDTLFDILLNTLSIDG 178
P R+S PV +A L+ + T +L + + +TLF +L N +DG
Sbjct: 167 PLRDSIEPVRNADLYFLSELVKDCTSIQKLVVFENAFETLFSLLENEGGVDG 218
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.2 bits (55), Expect = 1.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +2
Query: 29 RNSYSPVSSAALHEYWSSMSAVTENDELDLISDYN 133
++S SPVS + S++S+VTE+ E +L D N
Sbjct: 172 QSSTSPVSDSVDENLLSAVSSVTESVETNLHLDQN 206
>SPBC2A9.04c |||sir antagonist ortholog |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 741
Score = 25.4 bits (53), Expect = 2.2
Identities = 11/38 (28%), Positives = 17/38 (44%)
Frame = +2
Query: 5 EGPPGTPERNSYSPVSSAALHEYWSSMSAVTENDELDL 118
EG P N + P A+ E W S ++ + +DL
Sbjct: 68 EGGENDPFANPFQPPVKRAVKEAWDSFEPLSNDQLMDL 105
>SPCC965.08c |alr1||alanine racemase Alr1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 375
Score = 25.0 bits (52), Expect = 3.0
Identities = 12/23 (52%), Positives = 16/23 (69%)
Frame = +2
Query: 95 TENDELDLISDYNDTLFDILLNT 163
TE DEL LI DYN F I++++
Sbjct: 91 TEEDELKLIDDYN---FSIIIHS 110
>SPBC2F12.05c |||sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1310
Score = 24.6 bits (51), Expect = 3.9
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = -2
Query: 215 AAPPPPPHRNRSLRR*TEYSTGYR 144
+AP P H + L++ T Y +GY+
Sbjct: 249 SAPAVPQHMSGYLKKWTNYKSGYK 272
>SPAC1952.13 |ned1||lipin|Schizosaccharomyces pombe|chr 1|||Manual
Length = 656
Score = 24.2 bits (50), Expect = 5.2
Identities = 11/26 (42%), Positives = 15/26 (57%)
Frame = +2
Query: 11 PPGTPERNSYSPVSSAALHEYWSSMS 88
PP +P R SP S +AL + S +S
Sbjct: 287 PPASPSRTPASPKSDSALMDEDSDLS 312
>SPAC1F3.02c |mkh1||MEK kinase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1116
Score = 24.2 bits (50), Expect = 5.2
Identities = 9/13 (69%), Positives = 9/13 (69%)
Frame = -2
Query: 209 PPPPPHRNRSLRR 171
PPPPP SLRR
Sbjct: 543 PPPPPTETSSLRR 555
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 23.8 bits (49), Expect = 6.8
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 210 SSPTASPEPFAPSIDRVFNRISNNVSL*SEMRSNSSFSVTADMEDQYSCSA 58
SSPT++ + S + S + ++ S S+SSFS T S S+
Sbjct: 281 SSPTSTSSTISSSSSSSSSPTSTSSTISSSSSSSSSFSSTLSSSSMSSSSS 331
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 23.8 bits (49), Expect = 6.8
Identities = 12/33 (36%), Positives = 15/33 (45%)
Frame = +2
Query: 17 GTPERNSYSPVSSAALHEYWSSMSAVTENDELD 115
GT RN P + L + W+S N ELD
Sbjct: 672 GTTLRNLIYPYDTIELEDSWNSSWGCIPNIELD 704
>SPAC2F7.14c |||exosome subunit Rrp4 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 329
Score = 23.8 bits (49), Expect = 6.8
Identities = 15/46 (32%), Positives = 21/46 (45%)
Frame = +2
Query: 32 NSYSPVSSAALHEYWSSMSAVTENDELDLISDYNDTLFDILLNTLS 169
N +S VS L E S ENDE+D + N + I + L+
Sbjct: 242 NQHSSVSITRLEEEASESIYSNENDEIDGYTRLNISRVSICIKGLA 287
>SPAC23D3.07 |pup1||20S proteasome component beta
2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 23.8 bits (49), Expect = 6.8
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +1
Query: 16 GHAGTELVLAGVECRAARVLVL 81
GH G LVL G +C+ + +
Sbjct: 127 GHIGAYLVLGGYDCKGPHLFTI 148
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 23.4 bits (48), Expect = 9.0
Identities = 9/18 (50%), Positives = 11/18 (61%)
Frame = -1
Query: 210 SSPTASPEPFAPSIDRVF 157
S+P P PF P+ID F
Sbjct: 1010 SNPFQKPVPFIPAIDDTF 1027
>SPAC23H4.01c ||SPAP27G11.01|sterol binding ankyrin repeat
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 945
Score = 23.4 bits (48), Expect = 9.0
Identities = 15/57 (26%), Positives = 28/57 (49%)
Frame = +2
Query: 20 TPERNSYSPVSSAALHEYWSSMSAVTENDELDLISDYNDTLFDILLNTLSIDGANGS 190
T + N YS + H ++ S+V N++++ ISD + + N+ S+D S
Sbjct: 388 TSQLNHYS---ESGAHAADATKSSVAHNEKVEDISDSDIPIMKTSSNSTSLDADRDS 441
>SPAC31A2.05c |mis4||cohesin loading factor Mis4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1583
Score = 23.4 bits (48), Expect = 9.0
Identities = 18/47 (38%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
Frame = -1
Query: 201 TASPEPFAPSIDRVFNRISNNVSL*SEMRSNSSFSVTAD--MEDQYS 67
T S P +PS RVFN V L S +S + MED YS
Sbjct: 158 TPSSSPRSPSCSRVFNA----VQLCSPKKSKDDITTPKKRLMEDTYS 200
>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 1279
Score = 23.4 bits (48), Expect = 9.0
Identities = 10/30 (33%), Positives = 15/30 (50%)
Frame = -1
Query: 123 EMRSNSSFSVTADMEDQYSCSAALDTGEYE 34
E NS+ S D+E QY + G++E
Sbjct: 278 EKEENSAASTLDDLEPQYEMTTITIEGDFE 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,103,184
Number of Sequences: 5004
Number of extensions: 19180
Number of successful extensions: 89
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 89
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 91899990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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