Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K21
         (501 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|ch...    46   4e-06
SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|ch...    39   5e-04
SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr 2||...    33   0.018
SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr...    31   0.097
SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces po...    28   0.91 
SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr 1...    26   2.8  
SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces ...    26   3.7  
SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces pomb...    25   4.8  
SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1 |Schizosacc...    25   8.4  
SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.4  
SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces po...    25   8.4  

>SPAC17H9.09c |ras1|ste5|GTPase Ras1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 219

 Score = 45.6 bits (103), Expect = 4e-06
 Identities = 22/79 (27%), Positives = 45/79 (56%), Gaps = 1/79 (1%)
 Frame = +3

Query: 267 RVVVLGSPRSGKSAVVVRYLTKRYIGEYSSTGDFLYQHRVAFDGAVSEVEILDTSNCAIR 446
           ++VV+G    GKSA+ ++ +   ++ EY  T +  Y+ +   DG  + +++LDT+     
Sbjct: 10  KLVVVGDGGVGKSALTIQLIQSHFVDEYDPTIEDSYRKKCEIDGEGALLDVLDTAGQEEY 69

Query: 447 GCLAE-HVRWGDAFAVVYS 500
             + E ++R G+ F +VY+
Sbjct: 70  SAMREQYMRTGEGFLLVYN 88


>SPBC428.16c |rhb1||Rheb GTPase Rhb1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 185

 Score = 38.7 bits (86), Expect = 5e-04
 Identities = 17/55 (30%), Positives = 30/55 (54%)
 Frame = +3

Query: 267 RVVVLGSPRSGKSAVVVRYLTKRYIGEYSSTGDFLYQHRVAFDGAVSEVEILDTS 431
           R+ VLGS   GKS++ V+Y+   ++  Y  T +  +   + + G     EI+DT+
Sbjct: 8   RIAVLGSRSVGKSSLTVQYVENHFVESYYPTIENTFSKNIKYKGQEFATEIIDTA 62


>SPBC405.04c |ypt7||GTPase Ypt7|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 205

 Score = 33.5 bits (73), Expect = 0.018
 Identities = 16/58 (27%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
 Frame = +3

Query: 264 IRVVVLGSPRSGKSAVVVRYLTKRYIGEYSST--GDFLYQHRVAFDGAVSEVEILDTS 431
           ++V++LG    GK++++ +Y+ +++  +Y +T   DFL +  V  D  V  +++ DT+
Sbjct: 9   LKVIILGESGVGKTSIMNQYVNRKFSKDYKATIGADFLTK-EVLVDDKVVTLQLWDTA 65


>SPAPB1A10.10c |ypt71||GTPase Ypt71|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 208

 Score = 31.1 bits (67), Expect = 0.097
 Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
 Frame = +3

Query: 264 IRVVVLGSPRSGKSAVVVRYLTKRYIGEYSST--GDFLYQHRVAFDGAVSEVEILDTS 431
           ++VV+LG    GK+ ++ +++ +++  EY +T   DFL +  V  D  V+ +++ DT+
Sbjct: 9   LKVVILGDSGVGKTCLMNQFVNQKFSREYKATIGADFLTKDVVVDDKLVT-LQLWDTA 65


>SPAC23C4.08 |rho3||Rho family GTPase Rho3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 205

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 1/56 (1%)
 Frame = +3

Query: 267 RVVVLGSPRSGKSAVVVRYLTKRYIGE-YSSTGDFLYQHRVAFDGAVSEVEILDTS 431
           ++V+LG   +GK++ ++   TK Y  + Y  T    Y H +  DG   E+ + DT+
Sbjct: 15  KIVILGDGAAGKTS-LLNVFTKGYFPQVYEPTIFENYIHDIFVDGNSIELSLWDTA 69


>SPAC869.03c |||urea transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 11/37 (29%), Positives = 18/37 (48%)
 Frame = +3

Query: 309 VVVRYLTKRYIGEYSSTGDFLYQHRVAFDGAVSEVEI 419
           ++V Y+ KRY+GE   +  F    R    G +S   +
Sbjct: 27  ILVTYVLKRYVGEVQDSEHFTTASRSVKTGLISSAVV 63


>SPBC9B6.10 |cdc37||Hsp90 co-chaperone Cdc37|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 12/37 (32%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +3

Query: 342 GEYSSTGDFLYQH-RVAFDGAVSEVEILDTSNCAIRG 449
           G+YSS+ +FL +H  +  D   S+  +L+  N  + G
Sbjct: 259 GDYSSSEEFLKEHLNILADEEESDAILLEAFNAELEG 295


>SPAP8A3.05 |||ski complex subunit Ski7 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 695

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = +3

Query: 240 LMKMTVNRIRVVVLGSPRSGKSAVVVR 320
           L K+   R ++++LG P+SGK  ++ R
Sbjct: 273 LSKLVKPRTKLLLLGPPKSGKKTLLSR 299


>SPBC2G2.06c |apl1||AP-2 adaptor complex subunit Apl1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 677

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/32 (28%), Positives = 19/32 (59%)
 Frame = +3

Query: 300 KSAVVVRYLTKRYIGEYSSTGDFLYQHRVAFD 395
           ++ +V+R + ++Y G Y S    LY++  + D
Sbjct: 409 EAVIVIRDILRKYPGSYKSLVPILYENLDSLD 440


>SPAC30C2.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 457

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 12/32 (37%), Positives = 19/32 (59%), Gaps = 1/32 (3%)
 Frame = +3

Query: 243 MKMTVNRIRVVVL-GSPRSGKSAVVVRYLTKR 335
           +K  + RIR  ++ GS +   S VVV+YL  +
Sbjct: 126 LKERLERIRAAIVEGSKKEDASPVVVKYLNNK 157


>SPCC1795.09 |yps1||aspartic protease Yps1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 521

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 295 LLGL-PSTTTLIRFTVIFIRTVLFIYHGTYNREAINRTSY 179
           LLG+ PST + I   ++F R     YH +    AI +  Y
Sbjct: 374 LLGIRPSTDSEIVLGLLFFRNAYTFYHQSQKMIAIGQAFY 413


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,164
Number of Sequences: 5004
Number of extensions: 37408
Number of successful extensions: 98
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)