Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K21
         (501 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0893 + 7043130-7043182,7043309-7043335,7043461-7043560,704...    35   0.042
10_03_0038 - 7297210-7297248,7297361-7297429,7297524-7297731,729...    30   1.2  
05_03_0590 - 15884485-15884489,15884702-15884790,15885086-158852...    30   1.2  
03_06_0407 - 33714563-33714636,33714966-33715152,33715943-337160...    30   1.2  
07_03_0715 + 20889399-20890111,20890950-20891060,20891128-208913...    28   3.7  
01_06_1314 + 36215607-36215734,36215911-36216043,36216135-362162...    28   3.7  
02_01_0051 - 385738-385968,386439-386864                               27   6.4  
03_06_0408 - 33722741-33722893,33723174-33723350,33723798-337239...    27   8.5  
02_05_1357 + 35899480-35899578,35900247-35900334,35900438-359005...    27   8.5  

>01_01_0893 +
           7043130-7043182,7043309-7043335,7043461-7043560,
           7045110-7045256,7045342-7045422,7045509-7045654,
           7046030-7046099
          Length = 207

 Score = 34.7 bits (76), Expect = 0.042
 Identities = 17/58 (29%), Positives = 36/58 (62%), Gaps = 2/58 (3%)
 Frame = +3

Query: 264 IRVVVLGSPRSGKSAVVVRYLTKRYIGEYSST--GDFLYQHRVAFDGAVSEVEILDTS 431
           ++V++LG    GK++++ +Y+ K++  +Y +T   DFL +  V  D  +  ++I DT+
Sbjct: 9   LKVIILGDSGVGKTSLMNQYVNKKFSNQYKATIGADFLTK-EVQIDDRLFTLQIWDTA 65


>10_03_0038 -
           7297210-7297248,7297361-7297429,7297524-7297731,
           7297829-7297911,7298859-7298998,7299132-7299183
          Length = 196

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
 Frame = +3

Query: 261 RIRVVVLGSPRSGKSAVVVRYLTKRYIG-EYSSTGDFLYQHRVAFDGAVSEVEILDTSNC 437
           R + V +G    GKS +++++  KR+   E  +TG       VA DG  ++++I DT+  
Sbjct: 8   RFKFVTIGDAGVGKSCLLLQFTDKRFREVEDLTTGVEYGACVVAVDGKNTKLQIWDTAGQ 67

Query: 438 AIRGCLAEHVRWGDA 482
               C+      G+A
Sbjct: 68  EAFRCITRSYYRGNA 82


>05_03_0590 -
           15884485-15884489,15884702-15884790,15885086-15885251,
           15885333-15885393,15886256-15886392,15887936-15888002
          Length = 174

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 22/79 (27%), Positives = 39/79 (49%), Gaps = 2/79 (2%)
 Frame = +3

Query: 267 RVVVLGSPRSGKSAVVVRYLTKRYIGEYSSTGDFLY-QHRVAFDGAVSEVEILDTSNCAI 443
           ++V+LG  R GK+++V+RY+   +  +  +T    Y   R+  +G    + I DT+    
Sbjct: 16  KLVLLGDGRVGKTSLVLRYVNDVFSDKQEATVQASYLTKRLVVEGVPITLSIWDTAGQEK 75

Query: 444 RGCLAE-HVRWGDAFAVVY 497
              L   + R  DA  +VY
Sbjct: 76  FHALGPIYYRDADAALLVY 94


>03_06_0407 -
           33714563-33714636,33714966-33715152,33715943-33716093,
           33716520-33716632,33717022-33717085,33717180-33717391,
           33717540-33717621,33717811-33717866,33718004-33718072,
           33718524-33718772,33718873-33719049,33719556-33719702,
           33719794-33719926,33720093-33720307
          Length = 642

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 12/25 (48%), Positives = 19/25 (76%)
 Frame = +3

Query: 264 IRVVVLGSPRSGKSAVVVRYLTKRY 338
           +RVVV+G P +GKS++VV   T+ +
Sbjct: 16  VRVVVIGDPGTGKSSLVVSVATEAF 40


>07_03_0715 + 20889399-20890111,20890950-20891060,20891128-20891338,
            20891414-20891474,20891719-20891956,20892046-20892196,
            20892415-20892703,20893464-20894207,20894720-20894851,
            20895728-20895965,20896159-20896246,20896422-20896697
          Length = 1083

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 15/34 (44%), Positives = 21/34 (61%)
 Frame = -3

Query: 484  KASPHLTCSAKHPRIAQFDVSRISTSDTAPSNAT 383
            KAS  L  S  +P+I+ F ++RI  S+ A SN T
Sbjct: 924  KASNILLDSTMNPKISDFGMARIFYSNMAESNTT 957


>01_06_1314 +
           36215607-36215734,36215911-36216043,36216135-36216281,
           36217172-36217348,36217469-36217717,36217917-36217964,
           36218364-36218419,36218639-36218720,36219260-36219515,
           36219563-36219629,36219688-36219724,36219918-36220030,
           36220838-36220988,36221352-36221538,36221768-36221841
          Length = 634

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/23 (52%), Positives = 18/23 (78%)
 Frame = +3

Query: 264 IRVVVLGSPRSGKSAVVVRYLTK 332
           +RVVV+G P +GKS++VV   T+
Sbjct: 16  LRVVVIGDPGTGKSSLVVSAATE 38


>02_01_0051 - 385738-385968,386439-386864
          Length = 218

 Score = 27.5 bits (58), Expect = 6.4
 Identities = 19/62 (30%), Positives = 27/62 (43%)
 Frame = +3

Query: 285 SPRSGKSAVVVRYLTKRYIGEYSSTGDFLYQHRVAFDGAVSEVEILDTSNCAIRGCLAEH 464
           SP +G +A      T R+ G YS  GDF     V     ++ + +    N A+R  L  H
Sbjct: 19  SPSNGTAATST-IATNRW-GPYSGAGDFASNMAVILAALLAALALALALNAAVRYLLRRH 76

Query: 465 VR 470
            R
Sbjct: 77  RR 78


>03_06_0408 -
           33722741-33722893,33723174-33723350,33723798-33723947,
           33724085-33724145,33724338-33724558
          Length = 253

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 19/59 (32%), Positives = 29/59 (49%), Gaps = 2/59 (3%)
 Frame = +3

Query: 264 IRVVVLGSPRSGKSAVVVRYLTKRYIGEYSSTGDFLYQHRVAFD--GAVSEVEILDTSN 434
           +RV V+G   +GKS++V    T R+  +       L   R+  D   A   V I+DTS+
Sbjct: 15  VRVAVIGDHGTGKSSLVATIATGRFPDQDDGVARVLPPARLPVDYFPARVPVTIVDTSS 73


>02_05_1357 +
           35899480-35899578,35900247-35900334,35900438-35900592,
           35900652-35900715,35902910-35902974,35903061-35903126,
           35903644-35903745
          Length = 212

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 15/62 (24%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
 Frame = +3

Query: 249 MTVNR-IRVVVLGSPRSGKSAVVVRYLTKRYIGEYSSTGDFLYQHRVAFDGAVSEVEILD 425
           M+ +R I+ V +G    GK+ +++ Y +  +  +Y  T    +   V  DG+   + + D
Sbjct: 1   MSASRFIKCVTVGDGAVGKTCMLISYTSNTFPTDYVPTVFDNFSANVVVDGSTVNLGLWD 60

Query: 426 TS 431
           T+
Sbjct: 61  TA 62


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,747,470
Number of Sequences: 37544
Number of extensions: 240223
Number of successful extensions: 553
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 543
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)