Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K19
         (462 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces pombe...    29   0.46 
SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    24   9.8  
SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein Rad4|Schizosac...    24   9.8  

>SPCC1450.16c |||triacylglycerol lipase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 513

 Score = 28.7 bits (61), Expect = 0.46
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = -2

Query: 398 NVFSIWIMVFNKFSWNFAASS 336
           N+ SIW++V + F W F+A+S
Sbjct: 14  NISSIWLLVVSFFEWLFSATS 34


>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = -2

Query: 404 SKNVFSIWIMVFNKFSWNFAASSGVRSANFTPPLPS 297
           S+N +S   MV   FS N+A  SG+   +F   + S
Sbjct: 369 SQNYYSHLQMVAKHFSKNYANQSGIVQRSFAECISS 404


>SPAC23C4.18c |rad4|cut5, dre3|BRCT domain protein
           Rad4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 648

 Score = 24.2 bits (50), Expect = 9.8
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 325 DLTPDDAAKFQENLLKTMIQIEN 393
           D TP+     +EN L T + IEN
Sbjct: 276 DFTPETVQPLEENELDTELNIEN 298


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,991,718
Number of Sequences: 5004
Number of extensions: 38744
Number of successful extensions: 99
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 99
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)