Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K19
         (462 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_0011 - 25559099-25559238,25559781-25559814,25560172-255603...    28   3.2  
11_04_0128 + 13752727-13752809,13752922-13753129,13753238-137533...    27   7.3  
01_06_1173 - 35123626-35123635,35123722-35124074                       27   9.7  

>01_06_0011 -
           25559099-25559238,25559781-25559814,25560172-25560333,
           25560335-25560454
          Length = 151

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 7/10 (70%), Positives = 8/10 (80%)
 Frame = +3

Query: 297 GWKWWCEICR 326
           GW WWC +CR
Sbjct: 3   GWWWWCALCR 12


>11_04_0128 +
           13752727-13752809,13752922-13753129,13753238-13753303,
           13753611-13753767,13755629-13755712,13756355-13756461,
           13756832-13756958,13757319-13757407,13757812-13757943
          Length = 350

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = +1

Query: 325 DLTPDDAAKFQENLLKTMIQIENTFFELGRTSQRNCLI 438
           +LTPDD ++      ++   +    + L + SQR C+I
Sbjct: 111 ELTPDDCSQVMGMNFESCFHLSQLAYPLLKASQRGCII 148


>01_06_1173 - 35123626-35123635,35123722-35124074
          Length = 120

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/27 (40%), Positives = 16/27 (59%), Gaps = 1/27 (3%)
 Frame = +1

Query: 4   IPRCCRNSARGNLSLVS-TPDRRCLCG 81
           +PR C    +  L+  + TPDRR +CG
Sbjct: 51  VPRACCGGIQSLLAAANNTPDRRTICG 77


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,523,487
Number of Sequences: 37544
Number of extensions: 265814
Number of successful extensions: 653
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 643
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 653
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)