Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_K19
(462 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U97010-5|AAK73903.1| 444|Caenorhabditis elegans Hypothetical pr... 65 3e-11
U97010-4|AAL65798.1| 438|Caenorhabditis elegans Hypothetical pr... 65 3e-11
U97010-6|AAL65797.1| 501|Caenorhabditis elegans Hypothetical pr... 64 5e-11
U53338-2|AAA96190.2| 558|Caenorhabditis elegans Ammonium transp... 31 0.40
AF101319-4|AAC69352.1| 463|Caenorhabditis elegans Hypothetical ... 27 4.9
Z99281-39|CAE45094.2| 665|Caenorhabditis elegans Hypothetical p... 27 8.6
Z99281-38|CAE45095.2| 845|Caenorhabditis elegans Hypothetical p... 27 8.6
Z99281-36|CAB16527.3| 862|Caenorhabditis elegans Hypothetical p... 27 8.6
Z99281-34|CAJ44243.1| 917|Caenorhabditis elegans Hypothetical p... 27 8.6
AY611484-1|AAT37523.1| 917|Caenorhabditis elegans epidermal gro... 27 8.6
AL132948-21|CAC51051.2| 453|Caenorhabditis elegans Hypothetical... 27 8.6
>U97010-5|AAK73903.1| 444|Caenorhabditis elegans Hypothetical
protein W08A12.1b protein.
Length = 444
Score = 64.9 bits (151), Expect = 3e-11
Identities = 27/37 (72%), Positives = 31/37 (83%)
Frame = +3
Query: 195 NQNQKTVYKLVLTGGPCGGKTTGQSLLSTFFENLGWK 305
N+ + VYK+VLTGGPCGGKTT Q L+TFFENLGWK
Sbjct: 42 NERKFKVYKIVLTGGPCGGKTTAQVRLATFFENLGWK 78
Score = 56.4 bits (130), Expect = 9e-09
Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +1
Query: 307 GGVKFADLTPDDAAKFQENLLKTMIQIENTFF-ELGRTSQRNCLILCDRGAMD 462
G VKF++L + + FQ +LL TM QIENTFF + RN LI+CDRG MD
Sbjct: 92 GRVKFSELDTEQSYIFQRDLLATMHQIENTFFNQASAIKDRNVLIICDRGCMD 144
>U97010-4|AAL65798.1| 438|Caenorhabditis elegans Hypothetical
protein W08A12.1c protein.
Length = 438
Score = 64.9 bits (151), Expect = 3e-11
Identities = 27/37 (72%), Positives = 31/37 (83%)
Frame = +3
Query: 195 NQNQKTVYKLVLTGGPCGGKTTGQSLLSTFFENLGWK 305
N+ + VYK+VLTGGPCGGKTT Q L+TFFENLGWK
Sbjct: 36 NERKFKVYKIVLTGGPCGGKTTAQVRLATFFENLGWK 72
Score = 56.4 bits (130), Expect = 9e-09
Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +1
Query: 307 GGVKFADLTPDDAAKFQENLLKTMIQIENTFF-ELGRTSQRNCLILCDRGAMD 462
G VKF++L + + FQ +LL TM QIENTFF + RN LI+CDRG MD
Sbjct: 86 GRVKFSELDTEQSYIFQRDLLATMHQIENTFFNQASAIKDRNVLIICDRGCMD 138
>U97010-6|AAL65797.1| 501|Caenorhabditis elegans Hypothetical
protein W08A12.1a protein.
Length = 501
Score = 64.1 bits (149), Expect = 5e-11
Identities = 26/34 (76%), Positives = 30/34 (88%)
Frame = +3
Query: 204 QKTVYKLVLTGGPCGGKTTGQSLLSTFFENLGWK 305
++ VYK+VLTGGPCGGKTT Q L+TFFENLGWK
Sbjct: 102 ERKVYKIVLTGGPCGGKTTAQVRLATFFENLGWK 135
Score = 56.4 bits (130), Expect = 9e-09
Identities = 28/53 (52%), Positives = 35/53 (66%), Gaps = 1/53 (1%)
Frame = +1
Query: 307 GGVKFADLTPDDAAKFQENLLKTMIQIENTFF-ELGRTSQRNCLILCDRGAMD 462
G VKF++L + + FQ +LL TM QIENTFF + RN LI+CDRG MD
Sbjct: 149 GRVKFSELDTEQSYIFQRDLLATMHQIENTFFNQASAIKDRNVLIICDRGCMD 201
>U53338-2|AAA96190.2| 558|Caenorhabditis elegans Ammonium
transporter homolog protein4 protein.
Length = 558
Score = 31.1 bits (67), Expect = 0.40
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +3
Query: 234 GGPCGGKTTGQSLLSTFFENLGWKWWCEI 320
G GG T G ++ F LGW+W C +
Sbjct: 357 GNTIGGATNGGDQIAQAFAQLGWQWVCAL 385
>AF101319-4|AAC69352.1| 463|Caenorhabditis elegans Hypothetical
protein K08D9.2 protein.
Length = 463
Score = 27.5 bits (58), Expect = 4.9
Identities = 13/33 (39%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = -1
Query: 156 KLH*ERYKV-CLYYKCXXXXXXXXXXATQASPV 61
K H E+Y V CLYY C TQ +P+
Sbjct: 110 KQHIEKYDVTCLYYDCKRREIANSSFPTQTAPM 142
>Z99281-39|CAE45094.2| 665|Caenorhabditis elegans Hypothetical
protein Y57G11C.24e protein.
Length = 665
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -3
Query: 262 PVVLPPQGPPVRT 224
PVV+PP PPVRT
Sbjct: 472 PVVIPPPPPPVRT 484
>Z99281-38|CAE45095.2| 845|Caenorhabditis elegans Hypothetical
protein Y57G11C.24d protein.
Length = 845
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -3
Query: 262 PVVLPPQGPPVRT 224
PVV+PP PPVRT
Sbjct: 652 PVVIPPPPPPVRT 664
>Z99281-36|CAB16527.3| 862|Caenorhabditis elegans Hypothetical
protein Y57G11C.24a protein.
Length = 862
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -3
Query: 262 PVVLPPQGPPVRT 224
PVV+PP PPVRT
Sbjct: 669 PVVIPPPPPPVRT 681
>Z99281-34|CAJ44243.1| 917|Caenorhabditis elegans Hypothetical
protein Y57G11C.24g protein.
Length = 917
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -3
Query: 262 PVVLPPQGPPVRT 224
PVV+PP PPVRT
Sbjct: 724 PVVIPPPPPPVRT 736
>AY611484-1|AAT37523.1| 917|Caenorhabditis elegans epidermal growth
factor receptorpathway substrate 8 splice variant A
protein.
Length = 917
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/13 (76%), Positives = 11/13 (84%)
Frame = -3
Query: 262 PVVLPPQGPPVRT 224
PVV+PP PPVRT
Sbjct: 724 PVVIPPPPPPVRT 736
>AL132948-21|CAC51051.2| 453|Caenorhabditis elegans Hypothetical
protein Y39B6A.29 protein.
Length = 453
Score = 26.6 bits (56), Expect = 8.6
Identities = 11/37 (29%), Positives = 17/37 (45%)
Frame = +1
Query: 13 CCRNSARGNLSLVSTPDRRCLCGSNGSFYNFYSTFII 123
CC NS R + ++ PDRR S Y + ++
Sbjct: 375 CCLNSCRSVICALAMPDRRAQAFSISKLYQALGSCVL 411
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,363,524
Number of Sequences: 27780
Number of extensions: 230136
Number of successful extensions: 605
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 580
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 602
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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