Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K19
         (462 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor pr...    23   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    21   4.9  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    21   8.5  
AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase pro...    21   8.5  

>DQ869053-1|ABJ09600.1|  459|Apis mellifera capa-like receptor
           protein.
          Length = 459

 Score = 23.0 bits (47), Expect = 1.6
 Identities = 7/18 (38%), Positives = 11/18 (61%)
 Frame = +3

Query: 273 LSTFFENLGWKWWCEICR 326
           LS F++   W+W   IC+
Sbjct: 91  LSVFWQQYPWQWGLGICK 108


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +3

Query: 201  NQKTVYKLVLTGGPCGGKTTGQSL 272
            N KT++ L +   P G KTTG ++
Sbjct: 1249 NIKTLHGLKVIPTPAGLKTTGAAV 1272


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = -2

Query: 404 SKNVFSIWIMVFNKFSWNF 348
           S+ VF +  ++FN   W+F
Sbjct: 448 SRIVFPVAFIIFNILYWSF 466


>AB253415-1|BAE86926.1|  588|Apis mellifera alpha-glucosidase
           protein.
          Length = 588

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = -2

Query: 383 WIMVFNKFSWNF 348
           W+ VFN   W F
Sbjct: 171 WLSVFNGTGWTF 182


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 138,196
Number of Sequences: 438
Number of extensions: 2859
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)