Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_K18
(428 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical ... 56 1e-08
AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA ... 44 6e-05
AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line hel... 44 6e-05
AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical ... 37 0.005
U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase pr... 36 0.009
U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein. 36 0.009
U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GL... 36 0.009
L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase pr... 36 0.009
AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line hel... 36 0.009
AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line he... 36 0.009
U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical pr... 36 0.012
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 35 0.028
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 35 0.028
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 35 0.028
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 31 0.27
AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical ... 31 0.27
AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA ... 30 0.81
AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line hel... 30 0.81
AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical... 29 1.1
Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical pr... 29 1.4
Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical pr... 29 1.9
Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical pr... 29 1.9
U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein. 29 1.9
U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein. 29 1.9
AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical ... 29 1.9
AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical ... 29 1.9
AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical ... 29 1.9
AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein. 29 1.9
AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical ... 29 1.9
Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical pr... 28 2.5
U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family ... 28 2.5
AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical... 28 2.5
AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical... 28 2.5
AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical ... 28 2.5
AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein p... 28 2.5
Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical pr... 28 3.3
M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL receptor-re... 28 3.3
AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical ... 27 4.3
U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in bl... 27 5.7
AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical ... 27 5.7
AC024211-2|AAF36064.2| 152|Caenorhabditis elegans Hypothetical ... 27 5.7
Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical pr... 27 7.5
Z81546-1|CAB04449.2| 859|Caenorhabditis elegans Hypothetical pr... 26 10.0
AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical ... 26 10.0
>AC006672-4|AAK84542.1| 151|Caenorhabditis elegans Hypothetical
protein K08D12.3a protein.
Length = 151
Score = 55.6 bits (128), Expect = 1e-08
Identities = 34/105 (32%), Positives = 47/105 (44%), Gaps = 21/105 (20%)
Frame = +2
Query: 149 GTSARECTQGGVCARDAGFNRQREKCFKCNRTGHFARDCKEECLTC-------------- 286
G +R+C +GG G C+ C GH++RDC
Sbjct: 44 GHFSRDCPKGGSGGGQRGGGGGGGSCYNCGGRGHYSRDCPSARSEGGSGGYGGRGGEGRS 103
Query: 287 -----CYQNVIGTGHIARECAQS--PDEPSCYNCNKTGHIARNCP 400
CY N +GHI+REC +S +E CY C +TGHI+R+CP
Sbjct: 104 FGGQKCY-NCGRSGHISRECTESGSAEEKRCYQCQETGHISRDCP 147
Score = 43.2 bits (97), Expect = 8e-05
Identities = 21/62 (33%), Positives = 30/62 (48%)
Frame = +2
Query: 224 CFKCNRTGHFARDCKEECLTCCYQNVIGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 403
C+KC + GH +R+C G R +CYNC +TGH +R+CP+
Sbjct: 6 CYKCQQPGHISRNCPN-----------GESDGGRRGGGGGS--TCYNCQETGHFSRDCPK 52
Query: 404 GG 409
GG
Sbjct: 53 GG 54
Score = 37.1 bits (82), Expect = 0.005
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 353 SCYNCNKTGHIARNCPEGGRDNSNQ 427
+CY C + GHI+RNCP G D +
Sbjct: 5 NCYKCQQPGHISRNCPNGESDGGRR 29
Score = 35.5 bits (78), Expect = 0.016
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = +2
Query: 149 GTSARECTQGGVCARDAGFNRQREKCFKCNRTGHFARDCKEE 274
G +RECT+ G + + ++C++C TGH +RDC +
Sbjct: 116 GHISRECTESG--------SAEEKRCYQCQETGHISRDCPSQ 149
>AF079508-1|AAC28387.1| 1156|Caenorhabditis elegans germline RNA
helicase-4 protein.
Length = 1156
Score = 43.6 bits (98), Expect = 6e-05
Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Frame = +2
Query: 161 RECTQGGVCARDAGFNR-QREKCFKCNRTGHFARDCKEECLTC--CYQNVIGTGHIAREC 331
R C Q G A D R R C C GHFA DC + + C +N GH A++C
Sbjct: 596 RNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPC-RNCGQEGHFAKDC 654
Query: 332 AQS-----PDEPSCYNCNKTGHIARNCPEGGRD 415
P EP C C + GH CP +D
Sbjct: 655 QNERVRMEPTEP-CRRCAEEGHWGYECPTRPKD 686
Score = 43.2 bits (97), Expect = 8e-05
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +2
Query: 215 REKCFKCNRTGHFARDCKEECLT--CCYQNVIGTGHIARECAQSPDEP--SCYNCNKTGH 382
R C C + GHFA DC + + C +N GH A +C Q P P C NC + GH
Sbjct: 592 RFPCRNCEQLGHFASDCDQPRVPRGPC-RNCGIEGHFAVDCDQ-PKVPRGPCRNCGQEGH 649
Query: 383 IARNC 397
A++C
Sbjct: 650 FAKDC 654
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 224 CFKCNRTGHFARDC-KEECLTCCYQNVIGTGHIARECAQSPDEP--SCYNCNKTGHIARN 394
C C GH +++C K + +N GH A +C Q P P C NC GH A +
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQ-PRVPRGPCRNCGIEGHFAVD 630
Query: 395 CPE 403
C +
Sbjct: 631 CDQ 633
>AF039718-2|AAB96745.2| 1156|Caenorhabditis elegans Germ-line
helicase protein 4 protein.
Length = 1156
Score = 43.6 bits (98), Expect = 6e-05
Identities = 32/93 (34%), Positives = 39/93 (41%), Gaps = 8/93 (8%)
Frame = +2
Query: 161 RECTQGGVCARDAGFNR-QREKCFKCNRTGHFARDCKEECLTC--CYQNVIGTGHIAREC 331
R C Q G A D R R C C GHFA DC + + C +N GH A++C
Sbjct: 596 RNCEQLGHFASDCDQPRVPRGPCRNCGIEGHFAVDCDQPKVPRGPC-RNCGQEGHFAKDC 654
Query: 332 AQS-----PDEPSCYNCNKTGHIARNCPEGGRD 415
P EP C C + GH CP +D
Sbjct: 655 QNERVRMEPTEP-CRRCAEEGHWGYECPTRPKD 686
Score = 43.2 bits (97), Expect = 8e-05
Identities = 25/65 (38%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +2
Query: 215 REKCFKCNRTGHFARDCKEECLT--CCYQNVIGTGHIARECAQSPDEP--SCYNCNKTGH 382
R C C + GHFA DC + + C +N GH A +C Q P P C NC + GH
Sbjct: 592 RFPCRNCEQLGHFASDCDQPRVPRGPC-RNCGIEGHFAVDCDQ-PKVPRGPCRNCGQEGH 649
Query: 383 IARNC 397
A++C
Sbjct: 650 FAKDC 654
Score = 38.7 bits (86), Expect = 0.002
Identities = 21/63 (33%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = +2
Query: 224 CFKCNRTGHFARDC-KEECLTCCYQNVIGTGHIARECAQSPDEP--SCYNCNKTGHIARN 394
C C GH +++C K + +N GH A +C Q P P C NC GH A +
Sbjct: 572 CHNCGEEGHISKECDKPKVPRFPCRNCEQLGHFASDCDQ-PRVPRGPCRNCGIEGHFAVD 630
Query: 395 CPE 403
C +
Sbjct: 631 CDQ 633
>AC006672-5|AAM98003.1| 42|Caenorhabditis elegans Hypothetical
protein K08D12.3b protein.
Length = 42
Score = 37.1 bits (82), Expect = 0.005
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +2
Query: 353 SCYNCNKTGHIARNCPEGGRDNSNQ 427
+CY C + GHI+RNCP G D +
Sbjct: 5 NCYKCQQPGHISRNCPNGESDGGRR 29
Score = 26.6 bits (56), Expect = 7.5
Identities = 7/14 (50%), Positives = 11/14 (78%)
Frame = +2
Query: 224 CFKCNRTGHFARDC 265
C+KC + GH +R+C
Sbjct: 6 CYKCQQPGHISRNC 19
>U62772-1|AAB04136.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 36.3 bits (80), Expect = 0.009
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 287 CYQNVIGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 400
C+ N G GH + EC + P C+NC + GH + CP
Sbjct: 244 CF-NCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
Score = 35.1 bits (77), Expect = 0.022
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +2
Query: 200 GFNRQREKCFKCNRTGHFARDC----KEECLTCCYQNVIGTGHIARECAQ 337
G + CF C + GH + DC KE CY N GH +REC +
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCY-NCQQPGHTSRECTE 200
Score = 33.1 bits (72), Expect = 0.087
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = +2
Query: 245 GHFARDCKEECLTCCYQNVIGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 403
GH + C C GH + +C + E CYNC + GH +R C E
Sbjct: 150 GHGGGERNNNCFNCQQP-----GHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 31.5 bits (68), Expect = 0.27
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = +2
Query: 176 GGVCARDAGFNRQREKCFKCNRTGHFARDCKEECLTCCYQNVIGTGHIARECAQSPDEP 352
GG G R KCF C GH + +C E C N GH + EC +P +P
Sbjct: 228 GGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCF--NCGEQGHRSNEC-PNPAKP 283
Score = 30.3 bits (65), Expect = 0.61
Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 18/107 (16%)
Frame = +2
Query: 146 RGTSARECTQGGVCARDAGFNRQREK---CFKCNRTGHFARDCKE-----ECLTCCYQNV 301
R + C Q G + D R+ + C+ C + GH +R+C E E T +
Sbjct: 156 RNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGG 215
Query: 302 IGTGHIARECAQSPD----------EPSCYNCNKTGHIARNCPEGGR 412
G G+ D C+NC GH + CPE R
Sbjct: 216 AGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPR 262
>U60449-1|AAB03510.1| 974|Caenorhabditis elegans GLH-2 protein.
Length = 974
Score = 36.3 bits (80), Expect = 0.009
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 287 CYQNVIGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 400
C+ N G GH + EC + P C+NC + GH + CP
Sbjct: 455 CF-NCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 489
Score = 35.9 bits (79), Expect = 0.012
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 311 GHIARECAQSPDEPS---CYNCNKTGHIARNCPE 403
GH + +C + E CYNC + GH +R+CPE
Sbjct: 266 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 35.9 bits (79), Expect = 0.012
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 311 GHIARECAQSPDEPS---CYNCNKTGHIARNCPE 403
GH + +C + E CYNC + GH +R+CPE
Sbjct: 380 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 33.1 bits (72), Expect = 0.087
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 16/105 (15%)
Frame = +2
Query: 146 RGTSARECTQGGVCARDAGF-NRQREK--CFKCNRTGHFARDCKEE--------CLTCCY 292
R + C Q G + D ++RE C+ C + GH +RDC EE T +
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGF 428
Query: 293 --QNVIGTGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGR 412
N G G E + +E C+NC GH + CPE R
Sbjct: 429 GGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPR 473
Score = 33.1 bits (72), Expect = 0.087
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 176 GGVCARDAGFNRQRE--KCFKCNRTGHFARDCKEECLTCCYQNVIGTGHIARECAQSPDE 349
GG A G N +R KCF C GH + +C E C N GH + EC +P +
Sbjct: 437 GGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCF--NCGEQGHRSNEC-PNPAK 493
Query: 350 P 352
P
Sbjct: 494 P 494
Score = 31.1 bits (67), Expect = 0.35
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 146 RGTSARECTQGGVCARDAGF-NRQREK--CFKCNRTGHFARDCKEE 274
R + C Q G + D ++RE C+ C + GH +RDC EE
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEE 300
Score = 29.1 bits (62), Expect = 1.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 353 SCYNCNKTGHIARNCPE 403
+C+NC + GH + +CPE
Sbjct: 258 NCFNCQQPGHRSNDCPE 274
>U60194-1|AAB03337.1| 974|Caenorhabditis elegans RNA helicase GLH-2
protein.
Length = 974
Score = 36.3 bits (80), Expect = 0.009
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 287 CYQNVIGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 400
C+ N G GH + EC + P C+NC + GH + CP
Sbjct: 455 CF-NCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 489
Score = 35.9 bits (79), Expect = 0.012
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 311 GHIARECAQSPDEPS---CYNCNKTGHIARNCPE 403
GH + +C + E CYNC + GH +R+CPE
Sbjct: 266 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 35.9 bits (79), Expect = 0.012
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 311 GHIARECAQSPDEPS---CYNCNKTGHIARNCPE 403
GH + +C + E CYNC + GH +R+CPE
Sbjct: 380 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 33.1 bits (72), Expect = 0.087
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 16/105 (15%)
Frame = +2
Query: 146 RGTSARECTQGGVCARDAGF-NRQREK--CFKCNRTGHFARDCKEE--------CLTCCY 292
R + C Q G + D ++RE C+ C + GH +RDC EE T +
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGF 428
Query: 293 --QNVIGTGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGR 412
N G G E + +E C+NC GH + CPE R
Sbjct: 429 GGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPR 473
Score = 33.1 bits (72), Expect = 0.087
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 176 GGVCARDAGFNRQRE--KCFKCNRTGHFARDCKEECLTCCYQNVIGTGHIARECAQSPDE 349
GG A G N +R KCF C GH + +C E C N GH + EC +P +
Sbjct: 437 GGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCF--NCGEQGHRSNEC-PNPAK 493
Query: 350 P 352
P
Sbjct: 494 P 494
Score = 31.1 bits (67), Expect = 0.35
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 146 RGTSARECTQGGVCARDAGF-NRQREK--CFKCNRTGHFARDCKEE 274
R + C Q G + D ++RE C+ C + GH +RDC EE
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEE 300
Score = 29.1 bits (62), Expect = 1.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 353 SCYNCNKTGHIARNCPE 403
+C+NC + GH + +CPE
Sbjct: 258 NCFNCQQPGHRSNDCPE 274
>L19948-1|AAC27384.1| 763|Caenorhabditis elegans RNA helicase
protein.
Length = 763
Score = 36.3 bits (80), Expect = 0.009
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 287 CYQNVIGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 400
C+ N G GH + EC + P C+NC + GH + CP
Sbjct: 244 CF-NCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
Score = 35.1 bits (77), Expect = 0.022
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +2
Query: 200 GFNRQREKCFKCNRTGHFARDC----KEECLTCCYQNVIGTGHIARECAQ 337
G + CF C + GH + DC KE CY N GH +REC +
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCY-NCQQPGHTSRECTE 200
Score = 33.1 bits (72), Expect = 0.087
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = +2
Query: 245 GHFARDCKEECLTCCYQNVIGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 403
GH + C C GH + +C + E CYNC + GH +R C E
Sbjct: 150 GHGGGERNNNCFNCQQP-----GHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 31.5 bits (68), Expect = 0.27
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = +2
Query: 176 GGVCARDAGFNRQREKCFKCNRTGHFARDCKEECLTCCYQNVIGTGHIARECAQSPDEP 352
GG G R KCF C GH + +C E C N GH + EC +P +P
Sbjct: 228 GGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCF--NCGEQGHRSNEC-PNPAKP 283
Score = 30.3 bits (65), Expect = 0.61
Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 18/107 (16%)
Frame = +2
Query: 146 RGTSARECTQGGVCARDAGFNRQREK---CFKCNRTGHFARDCKE-----ECLTCCYQNV 301
R + C Q G + D R+ + C+ C + GH +R+C E E T +
Sbjct: 156 RNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGG 215
Query: 302 IGTGHIARECAQSPD----------EPSCYNCNKTGHIARNCPEGGR 412
G G+ D C+NC GH + CPE R
Sbjct: 216 AGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPR 262
>AF000197-1|AAB52901.2| 763|Caenorhabditis elegans Germ-line
helicase protein 1 protein.
Length = 763
Score = 36.3 bits (80), Expect = 0.009
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 287 CYQNVIGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 400
C+ N G GH + EC + P C+NC + GH + CP
Sbjct: 244 CF-NCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 278
Score = 35.1 bits (77), Expect = 0.022
Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 4/50 (8%)
Frame = +2
Query: 200 GFNRQREKCFKCNRTGHFARDC----KEECLTCCYQNVIGTGHIARECAQ 337
G + CF C + GH + DC KE CY N GH +REC +
Sbjct: 152 GGGERNNNCFNCQQPGHRSSDCPEPRKEREPRVCY-NCQQPGHTSRECTE 200
Score = 33.1 bits (72), Expect = 0.087
Identities = 17/56 (30%), Positives = 23/56 (41%), Gaps = 3/56 (5%)
Frame = +2
Query: 245 GHFARDCKEECLTCCYQNVIGTGHIARECAQSPDEPS---CYNCNKTGHIARNCPE 403
GH + C C GH + +C + E CYNC + GH +R C E
Sbjct: 150 GHGGGERNNNCFNCQQP-----GHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTE 200
Score = 31.5 bits (68), Expect = 0.27
Identities = 20/59 (33%), Positives = 25/59 (42%)
Frame = +2
Query: 176 GGVCARDAGFNRQREKCFKCNRTGHFARDCKEECLTCCYQNVIGTGHIARECAQSPDEP 352
GG G R KCF C GH + +C E C N GH + EC +P +P
Sbjct: 228 GGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPRGCF--NCGEQGHRSNEC-PNPAKP 283
Score = 30.3 bits (65), Expect = 0.61
Identities = 27/107 (25%), Positives = 39/107 (36%), Gaps = 18/107 (16%)
Frame = +2
Query: 146 RGTSARECTQGGVCARDAGFNRQREK---CFKCNRTGHFARDCKE-----ECLTCCYQNV 301
R + C Q G + D R+ + C+ C + GH +R+C E E T +
Sbjct: 156 RNNNCFNCQQPGHRSSDCPEPRKEREPRVCYNCQQPGHTSRECTEERKPREGRTGGFGGG 215
Query: 302 IGTGHIARECAQSPD----------EPSCYNCNKTGHIARNCPEGGR 412
G G+ D C+NC GH + CPE R
Sbjct: 216 AGFGNNGGNDGFGGDGGFGGGEERGPMKCFNCKGEGHRSAECPEPPR 262
>AC006625-11|AAK68269.1| 974|Caenorhabditis elegans Germ-line
helicase protein 2 protein.
Length = 974
Score = 36.3 bits (80), Expect = 0.009
Identities = 15/38 (39%), Positives = 21/38 (55%)
Frame = +2
Query: 287 CYQNVIGTGHIARECAQSPDEPSCYNCNKTGHIARNCP 400
C+ N G GH + EC + P C+NC + GH + CP
Sbjct: 455 CF-NCKGEGHRSAECPEPPR--GCFNCGEQGHRSNECP 489
Score = 35.9 bits (79), Expect = 0.012
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 311 GHIARECAQSPDEPS---CYNCNKTGHIARNCPE 403
GH + +C + E CYNC + GH +R+CPE
Sbjct: 266 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 299
Score = 35.9 bits (79), Expect = 0.012
Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 3/34 (8%)
Frame = +2
Query: 311 GHIARECAQSPDEPS---CYNCNKTGHIARNCPE 403
GH + +C + E CYNC + GH +R+CPE
Sbjct: 380 GHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPE 413
Score = 33.1 bits (72), Expect = 0.087
Identities = 31/105 (29%), Positives = 43/105 (40%), Gaps = 16/105 (15%)
Frame = +2
Query: 146 RGTSARECTQGGVCARDAGF-NRQREK--CFKCNRTGHFARDCKEE--------CLTCCY 292
R + C Q G + D ++RE C+ C + GH +RDC EE T +
Sbjct: 369 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEERKPREGRNGFTSGF 428
Query: 293 --QNVIGTGHIARECAQSPDE---PSCYNCNKTGHIARNCPEGGR 412
N G G E + +E C+NC GH + CPE R
Sbjct: 429 GGGNDGGFGGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPR 473
Score = 33.1 bits (72), Expect = 0.087
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = +2
Query: 176 GGVCARDAGFNRQRE--KCFKCNRTGHFARDCKEECLTCCYQNVIGTGHIARECAQSPDE 349
GG A G N +R KCF C GH + +C E C N GH + EC +P +
Sbjct: 437 GGGNAEGFGNNEERGPMKCFNCKGEGHRSAECPEPPRGCF--NCGEQGHRSNEC-PNPAK 493
Query: 350 P 352
P
Sbjct: 494 P 494
Score = 31.1 bits (67), Expect = 0.35
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Frame = +2
Query: 146 RGTSARECTQGGVCARDAGF-NRQREK--CFKCNRTGHFARDCKEE 274
R + C Q G + D ++RE C+ C + GH +RDC EE
Sbjct: 255 RNNNCFNCQQPGHRSNDCPEPKKEREPRVCYNCQQPGHNSRDCPEE 300
Score = 29.1 bits (62), Expect = 1.4
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +2
Query: 353 SCYNCNKTGHIARNCPE 403
+C+NC + GH + +CPE
Sbjct: 258 NCFNCQQPGHRSNDCPE 274
>U80837-3|AAB37904.2| 384|Caenorhabditis elegans Hypothetical
protein F07E5.5 protein.
Length = 384
Score = 35.9 bits (79), Expect = 0.012
Identities = 28/83 (33%), Positives = 34/83 (40%)
Frame = +2
Query: 155 SARECTQGGVCARDAGFNRQREKCFKCNRTGHFARDCKEECLTCCYQNVIGTGHIARECA 334
S EC + GV GF CF C + GH +RD C+QNV G
Sbjct: 265 SIHECKKKGV----KGF--PYATCFVCKQVGHISRD--------CHQNVNGV-------- 302
Query: 335 QSPDEPSCYNCNKTGHIARNCPE 403
PD C C H+ R+CPE
Sbjct: 303 -YPDGGCCNVCGANTHLRRDCPE 324
Score = 32.3 bits (70), Expect = 0.15
Identities = 18/65 (27%), Positives = 27/65 (41%), Gaps = 7/65 (10%)
Frame = +2
Query: 224 CFKCNRTGHFARDCKEECLTCCYQNVIGTG---HIARECAQSPDE----PSCYNCNKTGH 382
CF C GH DC + + G H EC + + +C+ C + GH
Sbjct: 231 CFHCREPGHRLADCPKRNSSSSDGVCFKCGSMEHSIHECKKKGVKGFPYATCFVCKQVGH 290
Query: 383 IARNC 397
I+R+C
Sbjct: 291 ISRDC 295
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 34.7 bits (76), Expect = 0.028
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +2
Query: 218 EKCFKCNRTG-HF---ARDCKEECLTCCYQNVIGTGHIARECAQSPDEPSCYNCNKTGHI 385
++C C + G H ++ K+ C + H+A C + + +C+ CN+ GHI
Sbjct: 629 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMA-SCFKLKNR-ACFRCNEMGHI 686
Query: 386 ARNCPEGGRDNSNQ 427
A NCP+ + S +
Sbjct: 687 AWNCPKKNENTSEK 700
Score = 30.7 bits (66), Expect = 0.46
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 164 ECTQGGVCARDAGFNRQREKCFKCNRTGHFARDCKEE 274
EC Q G F + CF+CN GH A +C ++
Sbjct: 658 ECQQSGWHMASC-FKLKNRACFRCNEMGHIAWNCPKK 693
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 34.7 bits (76), Expect = 0.028
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +2
Query: 218 EKCFKCNRTG-HF---ARDCKEECLTCCYQNVIGTGHIARECAQSPDEPSCYNCNKTGHI 385
++C C + G H ++ K+ C + H+A C + + +C+ CN+ GHI
Sbjct: 532 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMA-SCFKLKNR-ACFRCNEMGHI 589
Query: 386 ARNCPEGGRDNSNQ 427
A NCP+ + S +
Sbjct: 590 AWNCPKKNENTSEK 603
Score = 30.7 bits (66), Expect = 0.46
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 164 ECTQGGVCARDAGFNRQREKCFKCNRTGHFARDCKEE 274
EC Q G F + CF+CN GH A +C ++
Sbjct: 561 ECQQSGWHMASC-FKLKNRACFRCNEMGHIAWNCPKK 596
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 34.7 bits (76), Expect = 0.028
Identities = 20/74 (27%), Positives = 36/74 (48%), Gaps = 4/74 (5%)
Frame = +2
Query: 218 EKCFKCNRTG-HF---ARDCKEECLTCCYQNVIGTGHIARECAQSPDEPSCYNCNKTGHI 385
++C C + G H ++ K+ C + H+A C + + +C+ CN+ GHI
Sbjct: 543 DRCSDCQQRGWHMFWCSKKSKDNASQKCDECQQSGWHMA-SCFKLKNR-ACFRCNEMGHI 600
Query: 386 ARNCPEGGRDNSNQ 427
A NCP+ + S +
Sbjct: 601 AWNCPKKNENTSEK 614
Score = 30.7 bits (66), Expect = 0.46
Identities = 13/37 (35%), Positives = 18/37 (48%)
Frame = +2
Query: 164 ECTQGGVCARDAGFNRQREKCFKCNRTGHFARDCKEE 274
EC Q G F + CF+CN GH A +C ++
Sbjct: 572 ECQQSGWHMASC-FKLKNRACFRCNEMGHIAWNCPKK 607
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 31.5 bits (68), Expect = 0.27
Identities = 10/31 (32%), Positives = 19/31 (61%), Gaps = 2/31 (6%)
Frame = +2
Query: 317 IARECAQ--SPDEPSCYNCNKTGHIARNCPE 403
+ R+C Q +P + C+ C++ GH +CP+
Sbjct: 1342 LLRKCNQGSAPTDRQCHQCHRIGHFVESCPQ 1372
Score = 30.3 bits (65), Expect = 0.61
Identities = 26/83 (31%), Positives = 34/83 (40%)
Frame = +2
Query: 161 RECTQGGVCARDAGFNRQREKCFKCNRTGHFARDCKEECLTCCYQNVIGTGHIARECAQS 340
R+C QG A +RQ C +C+R GHF C + L AR+ S
Sbjct: 1344 RKCNQGS-----APTDRQ---CHQCHRIGHFVESCPQRAL----------AKEARKRFGS 1385
Query: 341 PDEPSCYNCNKTGHIARNCPEGG 409
S Y N +G +N EGG
Sbjct: 1386 NSTNSSYRSNDSGRGFKNGEEGG 1408
>AF016670-8|AAB66101.1| 783|Caenorhabditis elegans Hypothetical
protein K02F6.1 protein.
Length = 783
Score = 31.5 bits (68), Expect = 0.27
Identities = 8/23 (34%), Positives = 15/23 (65%)
Frame = +2
Query: 350 PSCYNCNKTGHIARNCPEGGRDN 418
P CY C GH++++CP+ ++
Sbjct: 311 PYCYKCKVVGHVSKDCPQSSTNS 333
Score = 26.2 bits (55), Expect = 10.0
Identities = 7/16 (43%), Positives = 11/16 (68%)
Frame = +2
Query: 224 CFKCNRTGHFARDCKE 271
C+KC GH ++DC +
Sbjct: 313 CYKCKVVGHVSKDCPQ 328
>AF079509-1|AAC28388.1| 720|Caenorhabditis elegans germline RNA
helicase-3 protein.
Length = 720
Score = 29.9 bits (64), Expect = 0.81
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +2
Query: 224 CFKCNRTGHFARDC---KEECLTCCYQNVIGTGHIARECA 334
CF C + GH A +C + EC C N H A ECA
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPN-----HRANECA 238
Score = 27.9 bits (59), Expect = 3.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 353 SCYNCNKTGHIARNCPEGGRDNSN 424
+C+NC K GH A C R+ +N
Sbjct: 203 TCFNCKKYGHRATECSAPQRECAN 226
>AF003145-4|AAB57719.1| 720|Caenorhabditis elegans Germ-line
helicase protein 3 protein.
Length = 720
Score = 29.9 bits (64), Expect = 0.81
Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
Frame = +2
Query: 224 CFKCNRTGHFARDC---KEECLTCCYQNVIGTGHIARECA 334
CF C + GH A +C + EC C N H A ECA
Sbjct: 204 CFNCKKYGHRATECSAPQRECANCGDPN-----HRANECA 238
Score = 27.9 bits (59), Expect = 3.3
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +2
Query: 353 SCYNCNKTGHIARNCPEGGRDNSN 424
+C+NC K GH A C R+ +N
Sbjct: 203 TCFNCKKYGHRATECSAPQRECAN 226
>AL132952-16|CAC70119.1| 107|Caenorhabditis elegans Hypothetical
protein Y51H4A.26 protein.
Length = 107
Score = 29.5 bits (63), Expect = 1.1
Identities = 17/42 (40%), Positives = 20/42 (47%), Gaps = 4/42 (9%)
Frame = +2
Query: 290 YQNVIGTGHIARECAQSPDEPSCYNCNKTGH----IARNCPE 403
YQ I GH R+C D P Y C K G I +NCP+
Sbjct: 49 YQTCI-FGHCVRKCTSERDCPLGYICFKNGDGQRCIKKNCPK 89
>Z68297-6|CAE45045.1| 302|Caenorhabditis elegans Hypothetical
protein F11A10.8 protein.
Length = 302
Score = 29.1 bits (62), Expect = 1.4
Identities = 11/26 (42%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +2
Query: 353 SCYNCNKTGHIARNCPE-GGRDNSNQ 427
+C+NC++ GH A CP G+ NQ
Sbjct: 205 TCHNCHERGHKATTCPHLPGQTRQNQ 230
Score = 27.9 bits (59), Expect = 3.3
Identities = 12/35 (34%), Positives = 17/35 (48%)
Frame = +2
Query: 224 CFKCNRTGHFARDCKEECLTCCYQNVIGTGHIARE 328
C+KC GH+A C + L + T H+A E
Sbjct: 252 CYKCGEKGHYANRCHKGALAF----LSNTAHLAHE 282
Score = 27.5 bits (58), Expect = 4.3
Identities = 19/66 (28%), Positives = 26/66 (39%), Gaps = 5/66 (7%)
Frame = +2
Query: 224 CFKCNRTGHFARDCKEECLTCCYQNVIGTGHIARECAQSPDEPS-----CYNCNKTGHIA 388
C C+ GH A C QN H + + PD+ + CY C + GH A
Sbjct: 206 CHNCHERGHKATTCPH-LPGQTRQNQ--DHHHRVDLSLIPDKKNLSDVTCYKCGEKGHYA 262
Query: 389 RNCPEG 406
C +G
Sbjct: 263 NRCHKG 268
>Z81494-3|CAB61009.1| 196|Caenorhabditis elegans Hypothetical
protein F02E9.2b protein.
Length = 196
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +2
Query: 314 HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGR 412
H A+ C D CY C H++ CPE R
Sbjct: 122 HKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRR 155
>Z81494-2|CAB61008.1| 227|Caenorhabditis elegans Hypothetical
protein F02E9.2a protein.
Length = 227
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +2
Query: 314 HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGR 412
H A+ C D CY C H++ CPE R
Sbjct: 153 HKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRR 186
>U75915-1|AAB49759.1| 227|Caenorhabditis elegans Lin-28 protein.
Length = 227
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +2
Query: 314 HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGR 412
H A+ C D CY C H++ CPE R
Sbjct: 153 HKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRR 186
>U75912-1|AAC47476.1| 227|Caenorhabditis elegans LIN-28 protein.
Length = 227
Score = 28.7 bits (61), Expect = 1.9
Identities = 12/34 (35%), Positives = 15/34 (44%), Gaps = 1/34 (2%)
Frame = +2
Query: 314 HIARECAQ-SPDEPSCYNCNKTGHIARNCPEGGR 412
H A+ C D CY C H++ CPE R
Sbjct: 153 HKAKSCPNVKTDAKVCYTCGSEEHVSSICPERRR 186
>AL032657-5|CAD27615.1| 1045|Caenorhabditis elegans Hypothetical
protein Y47H9C.4c protein.
Length = 1045
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 161 RECT-QGGVCARDAGFNRQREKCFKCNRTGHFARDCKEEC 277
++C Q G C+ AGF Q ++C K G++ DC ++C
Sbjct: 783 KQCNAQTGECSCPAGF--QGDRCDKPCEDGYYGPDCIKKC 820
>AL032657-4|CAD27614.1| 1070|Caenorhabditis elegans Hypothetical
protein Y47H9C.4b protein.
Length = 1070
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 161 RECT-QGGVCARDAGFNRQREKCFKCNRTGHFARDCKEEC 277
++C Q G C+ AGF Q ++C K G++ DC ++C
Sbjct: 783 KQCNAQTGECSCPAGF--QGDRCDKPCEDGYYGPDCIKKC 820
>AL032657-3|CAA21739.1| 1111|Caenorhabditis elegans Hypothetical
protein Y47H9C.4a protein.
Length = 1111
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 161 RECT-QGGVCARDAGFNRQREKCFKCNRTGHFARDCKEEC 277
++C Q G C+ AGF Q ++C K G++ DC ++C
Sbjct: 783 KQCNAQTGECSCPAGF--QGDRCDKPCEDGYYGPDCIKKC 820
>AF332568-1|AAG60061.1| 1111|Caenorhabditis elegans CED-1 protein.
Length = 1111
Score = 28.7 bits (61), Expect = 1.9
Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +2
Query: 161 RECT-QGGVCARDAGFNRQREKCFKCNRTGHFARDCKEEC 277
++C Q G C+ AGF Q ++C K G++ DC ++C
Sbjct: 783 KQCNAQTGECSCPAGF--QGDRCDKPCEDGYYGPDCIKKC 820
>AF077533-3|AAC64626.1| 1023|Caenorhabditis elegans Hypothetical
protein F54G2.2 protein.
Length = 1023
Score = 28.7 bits (61), Expect = 1.9
Identities = 8/18 (44%), Positives = 12/18 (66%)
Frame = +2
Query: 350 PSCYNCNKTGHIARNCPE 403
P C+ C + GHI+ CP+
Sbjct: 608 PQCFTCGEMGHISTYCPK 625
>Z54236-5|CAA90980.1| 386|Caenorhabditis elegans Hypothetical
protein C27B7.5 protein.
Length = 386
Score = 28.3 bits (60), Expect = 2.5
Identities = 8/16 (50%), Positives = 13/16 (81%)
Frame = +2
Query: 356 CYNCNKTGHIARNCPE 403
C++C + GHI+R CP+
Sbjct: 170 CFHCQEHGHISRMCPK 185
>U38377-3|AAA79748.1| 652|Caenorhabditis elegans Cohesin family
protein 1 protein.
Length = 652
Score = 28.3 bits (60), Expect = 2.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = -1
Query: 353 TARRGSARTHALCAPCQLHSGSNRSSTPPCSRAQSARCGC 234
+A S+RT + C P H S S P C A+ +RCGC
Sbjct: 16 SAHTSSSRT-SFCTPSTSHIVS--PSFPICIAAKCSRCGC 52
>AL117206-13|CAB60454.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.3 bits (60), Expect = 2.5
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Frame = +2
Query: 164 ECTQGGVCARDAGF-----NRQREKCFKCNRTGHFARDCKEECLTCCYQNVIGTGHIARE 328
+C+ G C R GF + C G + +C + CL C + + E
Sbjct: 1086 QCSNGASCDRVTGFCDCPSGFMGKNCESECPEGLWGSNCMKHCL-CMHGGECNKENGDCE 1144
Query: 329 CAQSPDEPSCYNCNKTGHIARNCPE 403
C PSC G RNC +
Sbjct: 1145 CIDGWTGPSCEFLCPFGQFGRNCAQ 1169
Score = 26.6 bits (56), Expect = 7.5
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 11/98 (11%)
Frame = +2
Query: 155 SARECTQGGVCA-RDAGFNRQ--------REKCFKCNRTGHFARDCKEECLTCCYQNVIG 307
S +C GG C+ R +G + EKC + R G++ DC +C G
Sbjct: 590 SCSDCQNGGKCSMRGSGLLSKCDCPSGYTGEKCEQICRNGYWGVDCAHKCSCKLCDPSTG 649
Query: 308 TGHI--ARECAQSPDEPSCYNCNKTGHIARNCPEGGRD 415
+ +C+ P Y +CP G D
Sbjct: 650 SCRCEDPEKCSDGPCPDGFYGSQCNLKCRMDCPNGRCD 687
Score = 26.2 bits (55), Expect = 10.0
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Frame = +2
Query: 167 CTQGGVCARDAGFNR-----QREKCFKCNRTGHFARDCKEECLTCCYQNVIGTGHIAREC 331
C G C R G E C K +GH+ C+E TC +N I+ C
Sbjct: 1173 CKNGASCDRKTGRCECLPGWSGEHCEKSCVSGHYGAKCEE---TCECENGALCDPISGHC 1229
Query: 332 AQSPDEPSCYNCNK---TGHIARNCPEGGR 412
+ P CN+ G+ R+C + R
Sbjct: 1230 SCQPGWRG-KKCNRPCLKGYFGRHCSQSCR 1258
>AL117204-20|CAB55136.2| 699|Caenorhabditis elegans Hypothetical
protein Y116A8C.32 protein.
Length = 699
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +2
Query: 314 HIARECAQSPD---EPSCYNCNKTGHIARNC--PEG 406
H + EC +P+ + C NC GHI+++C P+G
Sbjct: 438 HKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
Score = 26.2 bits (55), Expect = 10.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 221 KCFKCNRTGHFARDCK 268
KC C GH ++DCK
Sbjct: 454 KCTNCGAFGHISKDCK 469
>AL110498-8|CAB57911.2| 1651|Caenorhabditis elegans Hypothetical
protein Y64G10A.7 protein.
Length = 1651
Score = 28.3 bits (60), Expect = 2.5
Identities = 21/85 (24%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Frame = +2
Query: 164 ECTQGGVCARDAGF-----NRQREKCFKCNRTGHFARDCKEECLTCCYQNVIGTGHIARE 328
+C+ G C R GF + C G + +C + CL C + + E
Sbjct: 1086 QCSNGASCDRVTGFCDCPSGFMGKNCESECPEGLWGSNCMKHCL-CMHGGECNKENGDCE 1144
Query: 329 CAQSPDEPSCYNCNKTGHIARNCPE 403
C PSC G RNC +
Sbjct: 1145 CIDGWTGPSCEFLCPFGQFGRNCAQ 1169
Score = 26.6 bits (56), Expect = 7.5
Identities = 23/98 (23%), Positives = 35/98 (35%), Gaps = 11/98 (11%)
Frame = +2
Query: 155 SARECTQGGVCA-RDAGFNRQ--------REKCFKCNRTGHFARDCKEECLTCCYQNVIG 307
S +C GG C+ R +G + EKC + R G++ DC +C G
Sbjct: 590 SCSDCQNGGKCSMRGSGLLSKCDCPSGYTGEKCEQICRNGYWGVDCAHKCSCKLCDPSTG 649
Query: 308 TGHI--ARECAQSPDEPSCYNCNKTGHIARNCPEGGRD 415
+ +C+ P Y +CP G D
Sbjct: 650 SCRCEDPEKCSDGPCPDGFYGSQCNLKCRMDCPNGRCD 687
Score = 26.2 bits (55), Expect = 10.0
Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Frame = +2
Query: 167 CTQGGVCARDAGFNR-----QREKCFKCNRTGHFARDCKEECLTCCYQNVIGTGHIAREC 331
C G C R G E C K +GH+ C+E TC +N I+ C
Sbjct: 1173 CKNGASCDRKTGRCECLPGWSGEHCEKSCVSGHYGAKCEE---TCECENGALCDPISGHC 1229
Query: 332 AQSPDEPSCYNCNK---TGHIARNCPEGGR 412
+ P CN+ G+ R+C + R
Sbjct: 1230 SCQPGWRG-KKCNRPCLKGYFGRHCSQSCR 1258
>AJ243905-1|CAB64866.1| 699|Caenorhabditis elegans SF1 protein
protein.
Length = 699
Score = 28.3 bits (60), Expect = 2.5
Identities = 13/36 (36%), Positives = 21/36 (58%), Gaps = 5/36 (13%)
Frame = +2
Query: 314 HIARECAQSPD---EPSCYNCNKTGHIARNC--PEG 406
H + EC +P+ + C NC GHI+++C P+G
Sbjct: 438 HKSWECPDAPNVTNQIKCTNCGAFGHISKDCKNPKG 473
Score = 26.2 bits (55), Expect = 10.0
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = +2
Query: 221 KCFKCNRTGHFARDCK 268
KC C GH ++DCK
Sbjct: 454 KCTNCGAFGHISKDCK 469
>Z73907-1|CAA98124.1| 4753|Caenorhabditis elegans Hypothetical
protein F29D11.1 protein.
Length = 4753
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/75 (22%), Positives = 27/75 (36%)
Frame = +2
Query: 158 ARECTQGGVCARDAGFNRQREKCFKCNRTGHFARDCKEECLTCCYQNVIGTGHIARECAQ 337
+++C G F + F+C + C+ C Y + G EC +
Sbjct: 205 SKDCADGSDEPDTCEFKKCTANEFQCKN-----KRCQPRKFRCDYYDDCGDNSDEDECGE 259
Query: 338 SPDEPSCYNCNKTGH 382
P +NC TGH
Sbjct: 260 YRCPPGKWNCPGTGH 274
>Z19157-4|CAA79570.1| 1474|Caenorhabditis elegans Hypothetical
protein ZC84.6 protein.
Length = 1474
Score = 27.9 bits (59), Expect = 3.3
Identities = 13/38 (34%), Positives = 19/38 (50%), Gaps = 2/38 (5%)
Frame = +2
Query: 260 DCKEEC--LTCCYQNVIGTGHIARECAQSPDEPSCYNC 367
DC+ C L C N + G + + CA + D PS + C
Sbjct: 387 DCELYCARLQCDRGNPLRIGDVTQSCASNNDCPSSHEC 424
>M96150-1|AAA28105.1| 4753|Caenorhabditis elegans LDL
receptor-related protein protein.
Length = 4753
Score = 27.9 bits (59), Expect = 3.3
Identities = 17/75 (22%), Positives = 27/75 (36%)
Frame = +2
Query: 158 ARECTQGGVCARDAGFNRQREKCFKCNRTGHFARDCKEECLTCCYQNVIGTGHIARECAQ 337
+++C G F + F+C + C+ C Y + G EC +
Sbjct: 205 SKDCADGSDEPDTCEFKKCTANEFQCKN-----KRCQPRKFRCDYYDDCGDNSDEDECGE 259
Query: 338 SPDEPSCYNCNKTGH 382
P +NC TGH
Sbjct: 260 YRCPPGKWNCPGTGH 274
>AF100656-7|AAF99964.2| 615|Caenorhabditis elegans Hypothetical
protein F49F1.8 protein.
Length = 615
Score = 27.5 bits (58), Expect = 4.3
Identities = 9/22 (40%), Positives = 14/22 (63%)
Frame = +2
Query: 209 RQREKCFKCNRTGHFARDCKEE 274
R + +C C GH AR+CK++
Sbjct: 571 RFKGQCHYCKNVGHMARNCKKK 592
Score = 27.1 bits (57), Expect = 5.7
Identities = 8/14 (57%), Positives = 10/14 (71%)
Frame = +2
Query: 356 CYNCNKTGHIARNC 397
C+ C GH+ARNC
Sbjct: 576 CHYCKNVGHMARNC 589
>U51997-1|AAG24067.1| 572|Caenorhabditis elegans Activated in
blocked unfolded proteinresponse protein 2 protein.
Length = 572
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/47 (25%), Positives = 15/47 (31%)
Frame = +2
Query: 263 CKEECLTCCYQNVIGTGHIARECAQSPDEPSCYNCNKTGHIARNCPE 403
C EC C Q V Q P P C C + + C +
Sbjct: 204 CNLECQPTCQQAVSQCQQQCAPQCQQPSAPQCQQCQSSCQQTQQCQQ 250
>AL031630-5|CAA20985.1| 915|Caenorhabditis elegans Hypothetical
protein Y38H6C.5 protein.
Length = 915
Score = 27.1 bits (57), Expect = 5.7
Identities = 10/23 (43%), Positives = 11/23 (47%)
Frame = +2
Query: 353 SCYNCNKTGHIARNCPEGGRDNS 421
+CY C K GH A C D S
Sbjct: 410 NCYYCGKRGHTANECRRKKSDES 432
>AC024211-2|AAF36064.2| 152|Caenorhabditis elegans Hypothetical
protein Y76B12C.3 protein.
Length = 152
Score = 27.1 bits (57), Expect = 5.7
Identities = 12/32 (37%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
Frame = +2
Query: 197 AGFNRQREKCFKCNR-TGHFARDCKEECLTCC 289
AGFN + KC C R + + +CL CC
Sbjct: 32 AGFNPETLKCGLCERLSDYHLETLLTDCLQCC 63
>Z69302-8|CAA93261.3| 420|Caenorhabditis elegans Hypothetical
protein F40F8.5 protein.
Length = 420
Score = 26.6 bits (56), Expect = 7.5
Identities = 17/49 (34%), Positives = 21/49 (42%)
Frame = +2
Query: 236 NRTGHFARDCKEECLTCCYQNVIGTGHIARECAQSPDEPSCYNCNKTGH 382
+ TGH R + E NV TGH R D+PS + TGH
Sbjct: 268 DHTGHNHRRRRSEDHDPNDPNVDHTGHNHRRRRDQDDDPSDTTIDHTGH 316
>Z81546-1|CAB04449.2| 859|Caenorhabditis elegans Hypothetical
protein F53A2.1 protein.
Length = 859
Score = 26.2 bits (55), Expect = 10.0
Identities = 11/51 (21%), Positives = 24/51 (47%)
Frame = -3
Query: 276 HSSLQSRAKCPVRLHLKHFSRCRLKPASRAHTPPCVHSRAEVPRHXFALCS 124
H S+Q++ +RL +H + L + H+ +H+ +H +C+
Sbjct: 431 HVSIQTKPLVKLRLVSRHLNLAVLYKIRKEHSEIIIHNLGHCDKHLPCICT 481
>AL110498-7|CAB57909.2| 302|Caenorhabditis elegans Hypothetical
protein Y64G10A.1 protein.
Length = 302
Score = 26.2 bits (55), Expect = 10.0
Identities = 28/90 (31%), Positives = 30/90 (33%), Gaps = 8/90 (8%)
Frame = +2
Query: 164 ECTQGGVCARDAGFNRQREKCFKCNRTGHFARDCKEECLTCCYQNVIGT----GHIAREC 331
E T GVCA G C G C E T N I G A C
Sbjct: 31 EWTSTGVCATTCGACSNLNYTRTCLSDGLKNCACVGEPTTTMLCNTIACNYPRGSEAPCC 90
Query: 332 AQSPDEPS----CYNCNKTGHIARNCPEGG 409
SP E + C N K+ R CP GG
Sbjct: 91 NGSPVEINNFFHCTNATKSAPAKRCCPTGG 120
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,911,918
Number of Sequences: 27780
Number of extensions: 183059
Number of successful extensions: 731
Number of sequences better than 10.0: 45
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 699
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 713998766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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