Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K16
         (515 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC806.08c |mod21||gamma tubulin complex subunit Mod21|Schizosa...    25   5.1  
SPCC1672.09 |||triglyceride lipase-cholesterol esterase |Schizos...    25   5.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    25   8.9  
SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|c...    25   8.9  

>SPAC806.08c |mod21||gamma tubulin complex subunit
           Mod21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = -3

Query: 429 LTQKRLKRFFMKHCTTENLCQGSMLI*Y-NFSKLFRNNIY 313
           L  KR  RF+  H    N C    L  Y +F+++  N+I+
Sbjct: 458 LWSKRFSRFYYGHYVFVNTCHNFFLTLYQSFTEVDENSIF 497


>SPCC1672.09 |||triglyceride lipase-cholesterol esterase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 467

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 16/32 (50%), Positives = 19/32 (59%), Gaps = 3/32 (9%)
 Frame = -3

Query: 240 ESHLMRTQHDYIL---*ICDDKKGRH*IGTGH 154
           E HL+RT+ DYIL    I  D  GR  IG+ H
Sbjct: 93  EDHLVRTEDDYILCIHRISKDSPGR--IGSPH 122


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 7/19 (36%), Positives = 13/19 (68%)
 Frame = +2

Query: 221  VRMRCDSAHRIHIYSIHTI 277
            +  +CD+ +RIH Y+ H +
Sbjct: 1801 IEFKCDAPYRIHNYTGHAV 1819


>SPAC24H6.11c |||sulfate transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 958

 Score = 24.6 bits (51), Expect = 8.9
 Identities = 9/21 (42%), Positives = 15/21 (71%)
 Frame = +1

Query: 163 PYLVPSFFIITDL*YIVVLCA 225
           P+L+PSFF+I    + V++ A
Sbjct: 357 PFLIPSFFVIAPAIFYVLVWA 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,893,616
Number of Sequences: 5004
Number of extensions: 37444
Number of successful extensions: 61
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 61
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 61
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 208287218
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)