Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K16
         (515 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U42832-2|AAA83572.1|  558|Caenorhabditis elegans Udp-glucuronosy...    28   3.4  
Z81525-6|CAB82206.2|  346|Caenorhabditis elegans Hypothetical pr...    27   8.0  
AC006619-1|AAK68255.1|  241|Caenorhabditis elegans Hypothetical ...    27   8.0  

>U42832-2|AAA83572.1|  558|Caenorhabditis elegans
           Udp-glucuronosyltransferase protein57 protein.
          Length = 558

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
 Frame = +2

Query: 239 SAHRI---HIYSIHTIDYTTKKRF*LKP*ILFLNNFEKLYHINIDP 367
           S HR+    I +I   DYT KKRF   P +  L      Y +N DP
Sbjct: 225 SRHRLLDEPITNIFRTDYTIKKRFKNFPNVNTLKQQSAAYFVNTDP 270


>Z81525-6|CAB82206.2|  346|Caenorhabditis elegans Hypothetical
           protein F33A8.9 protein.
          Length = 346

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 13/45 (28%), Positives = 23/45 (51%)
 Frame = -3

Query: 498 YNLAITHLKFDIKKNLFVCVCPDLTQKRLKRFFMKHCTTENLCQG 364
           Y ++ +H  +DI   L       ++Q+R ++FFM +C     C G
Sbjct: 62  YCVSRSHDLWDILSQLETSKGVAISQRRKRQFFMNYCNDVTNCGG 106


>AC006619-1|AAK68255.1|  241|Caenorhabditis elegans Hypothetical
           protein C46C11.3 protein.
          Length = 241

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = +3

Query: 138 GKNILCVPSLSSAFLFYHHRFIIYSRVVCA 227
           G  IL   ++ + + FYHHR+ +Y R V A
Sbjct: 123 GAVILLCTNVLAVYTFYHHRY-MYKRAVAA 151


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,380,628
Number of Sequences: 27780
Number of extensions: 212554
Number of successful extensions: 465
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 465
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 996506972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)