Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_K13
(617 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0151 + 1067067-1067222,1067586-1067690,1067904-1067990,106... 70 2e-12
04_04_1360 + 32889597-32890343 65 5e-11
06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-13... 49 3e-06
07_03_0955 + 22867448-22868248 46 3e-05
03_01_0302 - 2361948-2362649,2363422-2363617,2363873-2363997,236... 39 0.004
04_04_0349 + 24588184-24588315,24588481-24588543,24588674-245887... 38 0.006
07_03_1445 + 26580293-26580610,26580814-26581314,26581411-265815... 38 0.008
09_04_0721 + 19725695-19725697,19725793-19725859,19725944-197260... 36 0.026
03_06_0526 - 34515218-34515372,34515454-34515567,34515651-345157... 36 0.026
07_03_1453 - 26649922-26650064,26650148-26650244,26651260-266514... 33 0.24
04_04_1585 + 34616343-34616531,34616677-34616742,34616842-346169... 32 0.42
06_02_0322 + 14369221-14369540,14370240-14370918,14371347-143715... 31 0.55
06_01_0312 + 2246899-2247105,2247182-2247374,2247607-2247712,224... 31 0.55
06_03_0878 + 25606788-25606926,25607205-25607279,25607362-256074... 31 0.73
06_01_0375 + 2699179-2699264,2699697-2699786,2699913-2699991,270... 31 0.97
03_02_0334 + 7570568-7570709,7571622-7571844,7572178-7572257,757... 31 0.97
06_01_0939 + 7232682-7232933,7233048-7233228,7233354-7233463,723... 30 1.7
02_04_0621 - 24502383-24502476,24502532-24504015,24504125-245041... 29 3.0
12_02_1067 - 25792295-25793167 28 5.2
01_07_0132 - 41298184-41298558,41298648-41298729,41298850-412989... 28 5.2
10_08_0451 + 18033065-18033253,18033746-18033805,18034256-180343... 28 6.8
06_01_0227 - 1733119-1734099 28 6.8
06_01_0503 - 3596664-3596837,3597647-3598069,3598362-3598595,359... 27 9.0
05_04_0096 - 17931061-17931435,17931539-17931620,17932319-179324... 27 9.0
05_01_0013 - 85732-86829 27 9.0
04_04_1158 - 31342934-31343272,31343508-31343658,31343745-313439... 27 9.0
04_03_0375 - 15085537-15085827,15086742-15087101,15087127-15087684 27 9.0
01_06_0896 + 32824105-32825076 27 9.0
01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008 27 9.0
>02_01_0151 +
1067067-1067222,1067586-1067690,1067904-1067990,
1068071-1068121,1068265-1068291,1068292-1068385,
1068610-1068845
Length = 251
Score = 69.7 bits (163), Expect = 2e-12
Identities = 39/105 (37%), Positives = 58/105 (55%), Gaps = 5/105 (4%)
Frame = +1
Query: 19 LLAWYLWTQRRHLRGLRVLELGCGTGLPGILAAKCGARVVLTDSVALPRSLRHLSSCCEA 198
+LA Y+W QR V+ELG GT LPG++AAK GA V LTD L ++ C
Sbjct: 68 ILAEYVWQQRSRFTASTVVELGAGTSLPGLVAAKVGADVTLTDIAHNTEVLNNIRQVCGL 127
Query: 199 NGL--VPNRD---VQIVGLSWGLFLSEIHNLQPVDLLLASDCFYE 318
N + N+ +Q++GL+WG + +L P D++L +D Y+
Sbjct: 128 NNVNCTLNKSTTLMQVLGLTWGEWDEPTFDLHP-DVILGADVLYD 171
>04_04_1360 + 32889597-32890343
Length = 248
Score = 64.9 bits (151), Expect = 5e-11
Identities = 47/111 (42%), Positives = 58/111 (52%), Gaps = 2/111 (1%)
Frame = +1
Query: 52 HLRGLRVLELGCGTGLPGILAAKC--GARVVLTDSVALPRSLRHLSSCCEANGLVPNRDV 225
HLRG VLELG GTGLPGI A C AR VLTD L LR + +ANGL +
Sbjct: 66 HLRGATVLELGAGTGLPGIAAVACLGAARCVLTDVRPLLPGLR---ANADANGLTAEQ-A 121
Query: 226 QIVGLSWGLFLSEIHNLQPVDLLLASDCFYEPTQFEEVLSTVAYLLEGTDA 378
+ L WG L +Q VD++L SD FY+P + T+ L D+
Sbjct: 122 DVRELRWGGHLEP--EVQ-VDVVLMSDVFYDPDDMPAMADTLHGLWRDGDS 169
>06_01_0007 + 130582-131544,132187-132264,132615-132732,133228-133271,
133389-133448,133536-133588,133671-133837,133963-134167,
134989-135046,135225-135281,135363-135608,135938-136002,
136090-136158,136238-136331,136467-136607,137159-137304,
137452-138110,138222-138335,138406-138560
Length = 1163
Score = 49.2 bits (112), Expect = 3e-06
Identities = 36/103 (34%), Positives = 49/103 (47%), Gaps = 1/103 (0%)
Frame = +1
Query: 55 LRGLRVLELGCGTGLPGILAAKCGARVVLTDSVALPRSLRHLSSCCEAN-GLVPNRDVQI 231
LR R LELG G GL G +AA GA V+LTD LP L+ L + N G ++
Sbjct: 998 LRAARALELGAGCGLAGCVAALLGAHVLLTD---LPDRLKLLRKNIDLNVGDDARGSARV 1054
Query: 232 VGLSWGLFLSEIHNLQPVDLLLASDCFYEPTQFEEVLSTVAYL 360
L W P+D +L SD Y +++L T+ +L
Sbjct: 1055 AQLVWADDPHPDLLNPPLDYVLGSDVIYSEEAVDDLLLTLKHL 1097
>07_03_0955 + 22867448-22868248
Length = 266
Score = 45.6 bits (103), Expect = 3e-05
Identities = 37/120 (30%), Positives = 58/120 (48%), Gaps = 6/120 (5%)
Frame = +1
Query: 64 LRVLELGCGTGLPGI-LAAKCGARVVLTDSVALPRSLRHLSSCCEANGLVPNRDVQIVGL 240
L +LELG GTG G+ LAA A VL+D A +LRH +S V +V L
Sbjct: 100 LGILELGSGTGAAGLALAAALPAHAVLSDLPAALPNLRHNASLNAPLLDARGGSVSVVPL 159
Query: 241 SWG--LFLSEIHNLQPV---DLLLASDCFYEPTQFEEVLSTVAYLLEGTDARFLCSYQER 405
WG + + P DL++ASD Y + ++ T+ + ++G + F+ ++ R
Sbjct: 160 PWGDAAAMEAVAAPPPASRFDLVVASDVVYYEALVDPLIETMRFFVKG-EVVFVMAHMRR 218
>03_01_0302 -
2361948-2362649,2363422-2363617,2363873-2363997,
2364118-2364180,2364445-2364495,2364597-2364668,
2364779-2364886,2365031-2365135,2365505-2365555,
2365971-2365995,2366234-2366258,2366352-2366439
Length = 536
Score = 38.7 bits (86), Expect = 0.004
Identities = 42/135 (31%), Positives = 59/135 (43%), Gaps = 12/135 (8%)
Frame = +1
Query: 55 LRGLRVLELGCGT-GLPGILAAKCGARVVLTDSVALPRSLRHLSSCCEANGLVPN--RDV 225
L G RVLELGCG+ G+ ++AA VV TD A L ++ A+ L P+ + +
Sbjct: 354 LAGKRVLELGCGSAGICSMVAATVAQFVVATDGDAESLDLLRENT---ASNLEPDLLKKI 410
Query: 226 QIVGLSWG--LFLSEIHNLQP----VDLLLASDCFYEPTQFEEVLSTVAYLLEGTD---A 378
I L WG L + L D ++ +D Y P + T L+ D A
Sbjct: 411 LIRKLFWGDKDDLKAVRELSSDGAGFDCIIGTDVTYNPDAIFPLFKTARELISNKDSDAA 470
Query: 379 RFLCSYQERSTDWSI 423
LC Q R + SI
Sbjct: 471 LILCYIQRRVDEDSI 485
>04_04_0349 +
24588184-24588315,24588481-24588543,24588674-24588740,
24588819-24588919,24589082-24589126,24589236-24589697,
24589905-24590075
Length = 346
Score = 37.9 bits (84), Expect = 0.006
Identities = 18/27 (66%), Positives = 19/27 (70%)
Frame = +1
Query: 58 RGLRVLELGCGTGLPGILAAKCGARVV 138
RG RVLELGCG+GL GI A GA V
Sbjct: 115 RGKRVLELGCGSGLAGIFACLKGASTV 141
>07_03_1445 +
26580293-26580610,26580814-26581314,26581411-26581508,
26581900-26581978,26582065-26582325,26582409-26582576,
26582800-26583237
Length = 620
Score = 37.5 bits (83), Expect = 0.008
Identities = 19/60 (31%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Frame = +1
Query: 55 LRGLRVLELGCGTGLPGILAAKCGA-RVVLTDSVALPRSLRHLSSCCEANGLVPNRDVQI 231
+ G VL++GCGTG+ + AAK GA RV+ D A + + + ++NG + + ++++
Sbjct: 290 MNGATVLDVGCGTGILSLFAAKAGASRVIAVDGSA--KMVSVATEVAKSNGFLYDENMEM 347
>09_04_0721 +
19725695-19725697,19725793-19725859,19725944-19726044,
19726780-19726824,19727052-19727522,19727972-19728142
Length = 285
Score = 35.9 bits (79), Expect = 0.026
Identities = 17/27 (62%), Positives = 18/27 (66%)
Frame = +1
Query: 58 RGLRVLELGCGTGLPGILAAKCGARVV 138
R +VLELGCG GLPGI A GA V
Sbjct: 51 RSKQVLELGCGYGLPGIFACLKGASTV 77
>03_06_0526 -
34515218-34515372,34515454-34515567,34515651-34515722,
34515832-34515974,34516457-34516635,34517798-34517874,
34517994-34518150
Length = 298
Score = 35.9 bits (79), Expect = 0.026
Identities = 31/118 (26%), Positives = 55/118 (46%), Gaps = 2/118 (1%)
Frame = +1
Query: 19 LLAWYLWTQRRHLRGLRVLELGCGTGLPGILAAKCGARVVLTDSVALPRSLRHLSSCCEA 198
L A +L + L G R+LELG GTG I K + T +++ C+A
Sbjct: 116 LFADWLVKNKSILHGRRILELGSGTGALAIFLRKAFQVDITTTDYDDGEIQENIAYNCKA 175
Query: 199 N--GLVPNRDVQIVGLSWGLFLSEIHNLQPVDLLLASDCFYEPTQFEEVLSTVAYLLE 366
N G++P+ + +WG + + D+++ASD Q+ + T+++LL+
Sbjct: 176 NDLGVLPH-----IRHTWGDQFPVL--IPDWDIVIASDILLYVKQYPNLTRTLSFLLK 226
>07_03_1453 -
26649922-26650064,26650148-26650244,26651260-26651418,
26651478-26651603
Length = 174
Score = 32.7 bits (71), Expect = 0.24
Identities = 17/45 (37%), Positives = 25/45 (55%)
Frame = +1
Query: 13 APLLAWYLWTQRRHLRGLRVLELGCGTGLPGILAAKCGARVVLTD 147
A L+ YL ++ ++ELG G G+ GIL ++ VVLTD
Sbjct: 101 AVLMNTYLSEHPETVKDHSIIELGSGVGITGILCSRFCKEVVLTD 145
>04_04_1585 +
34616343-34616531,34616677-34616742,34616842-34616910,
34617408-34617443,34617877-34617942,34618216-34618284,
34618394-34618471,34618674-34618752,34618866-34618960,
34619056-34619140,34619390-34619571,34619681-34619799,
34620529-34620550
Length = 384
Score = 31.9 bits (69), Expect = 0.42
Identities = 11/31 (35%), Positives = 21/31 (67%)
Frame = +1
Query: 46 RRHLRGLRVLELGCGTGLPGILAAKCGARVV 138
++ + G V+++GCGTG+ + A+ GA+ V
Sbjct: 79 QKFIEGKVVMDVGCGTGILSVFCARAGAKCV 109
>06_02_0322 +
14369221-14369540,14370240-14370918,14371347-14371573,
14372121-14372312,14372394-14372550,14373860-14374093
Length = 602
Score = 31.5 bits (68), Expect = 0.55
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 131 RAPHFAAKIPGKPVPQPSSRTRNPRKCLLCVQRYQASNGAD 9
R P A + PG + ++ PR +LCV+ ASN AD
Sbjct: 131 RTPSSAWRFPGNGLGPGHAKLTRPRSAILCVRSGTASNPAD 171
>06_01_0312 +
2246899-2247105,2247182-2247374,2247607-2247712,
2247958-2248147,2248472-2248657,2248739-2248822,
2249207-2249383
Length = 380
Score = 31.5 bits (68), Expect = 0.55
Identities = 18/50 (36%), Positives = 25/50 (50%)
Frame = +1
Query: 52 HLRGLRVLELGCGTGLPGILAAKCGARVVLTDSVALPRSLRHLSSCCEAN 201
H RG VL++G G+G+ I +A+ GAR V +V H AN
Sbjct: 65 HFRGKVVLDVGTGSGILAIWSAQAGARKVY--AVEATNMAEHARELARAN 112
>06_03_0878 +
25606788-25606926,25607205-25607279,25607362-25607426,
25607504-25607606,25607712-25607762,25608271-25608424,
25608781-25608925,25609039-25609144,25609267-25609415
Length = 328
Score = 31.1 bits (67), Expect = 0.73
Identities = 11/29 (37%), Positives = 19/29 (65%)
Frame = +1
Query: 61 GLRVLELGCGTGLPGILAAKCGARVVLTD 147
G+ +E+G GTGL G+ A+ ++ +TD
Sbjct: 117 GVTAIEIGAGTGLVGLALARVAKKIFITD 145
>06_01_0375 +
2699179-2699264,2699697-2699786,2699913-2699991,
2700816-2700893,2701290-2701338,2702183-2702232,
2702704-2702853,2703437-2703517,2703593-2703609,
2705804-2705893,2706033-2706111,2706234-2706311,
2707554-2707687,2707858-2707936,2708108-2708188,
2708263-2708400
Length = 452
Score = 30.7 bits (66), Expect = 0.97
Identities = 14/33 (42%), Positives = 21/33 (63%)
Frame = +1
Query: 55 LRGLRVLELGCGTGLPGILAAKCGARVVLTDSV 153
L GL+V+++GCG G+ A+ GA V D+V
Sbjct: 68 LEGLKVIDVGCGGGILSEPLARMGATVTGIDAV 100
>03_02_0334 +
7570568-7570709,7571622-7571844,7572178-7572257,
7572869-7572929,7573670-7573796
Length = 210
Score = 30.7 bits (66), Expect = 0.97
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 2/48 (4%)
Frame = +1
Query: 10 SAPLLAWYLWTQRRHLRGLRVLELGCGTGLPGI-LAAKCGA-RVVLTD 147
S +LA+Y R +VLELG G GL G+ +AA A VV++D
Sbjct: 153 SEEVLAYYCINHSDMFRSKKVLELGSGYGLAGLAIAASTDADEVVISD 200
>06_01_0939 +
7232682-7232933,7233048-7233228,7233354-7233463,
7233833-7233911,7233979-7234046,7234129-7234195,
7234704-7234834
Length = 295
Score = 29.9 bits (64), Expect = 1.7
Identities = 19/60 (31%), Positives = 29/60 (48%)
Frame = +1
Query: 46 RRHLRGLRVLELGCGTGLPGILAAKCGARVVLTDSVALPRSLRHLSSCCEANGLVPNRDV 225
R L G+R++++G G GLPG++ A T ++ + L E GL N DV
Sbjct: 117 RGDLGGMRLVDVGSGAGLPGLILAVARPSWKFTLLESMQKRCLFLEHAVEVMGL-SNVDV 175
>02_04_0621 -
24502383-24502476,24502532-24504015,24504125-24504177,
24504871-24504984,24505068-24505202,24505960-24506055,
24506692-24506827
Length = 703
Score = 29.1 bits (62), Expect = 3.0
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = -1
Query: 140 RTTRAPHFAAKIPGKPVPQPSSRTRNPRK 54
R R P F A +P+P+PSS PRK
Sbjct: 23 RPPRGPSFQAPAVPRPLPEPSSPGGRPRK 51
>12_02_1067 - 25792295-25793167
Length = 290
Score = 28.3 bits (60), Expect = 5.2
Identities = 27/111 (24%), Positives = 42/111 (37%), Gaps = 2/111 (1%)
Frame = +1
Query: 88 GTGLPGILAAKCGARVVLTDSVALPRSLRHLSSCCEANGLVPNRDVQIVGLSWGLFLSEI 267
G G PG + K + D+ A+ SL L C +P ++ L+ I
Sbjct: 177 GAGCPGFSSLKMAGAIRDVDAAAMAASLPRLKRLCLDGCYLPRHEL----------LAVI 226
Query: 268 HNLQPVDLLLASDCFYEPTQFEEVLSTVAYL--LEGTDARFLCSYQERSTD 414
H ++ L A C EEV A + LE +R + + +R D
Sbjct: 227 HGCLELESLSAKHCVGFDEGDEEVAREAAMIGRLEVGGSRLVDKFDQRDVD 277
>01_07_0132 -
41298184-41298558,41298648-41298729,41298850-41298977,
41299059-41299157,41299279-41299434,41300709-41300783,
41301962-41302137,41303210-41303252,41303336-41303503,
41303584-41303731,41306316-41306587
Length = 573
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/52 (30%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = +1
Query: 193 EANGLVPNRDVQIVGLSWGLFLSEIHNLQPVDLLLASDCFYEPTQ-FEEVLS 345
+ GL+ N +V + WG F S P D+LL + Q FE+++S
Sbjct: 335 KCQGLLTNSGGMVVNMEWGNFWSSHLPRTPYDILLDDETHNRNDQGFEKMIS 386
>10_08_0451 +
18033065-18033253,18033746-18033805,18034256-18034324,
18034751-18034786,18035081-18035146,18035345-18035443,
18035543-18035620,18035724-18035802,18035999-18036093,
18036251-18036335,18036505-18036698,18036804-18036922,
18037015-18037057
Length = 403
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/28 (50%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
Frame = +1
Query: 70 VLELGCGTGLPGILAAKCG-ARVVLTDS 150
VL++GCGTG+ I A G ARV D+
Sbjct: 85 VLDVGCGTGVLSIFCAFAGAARVYAVDA 112
>06_01_0227 - 1733119-1734099
Length = 326
Score = 27.9 bits (59), Expect = 6.8
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 55 LRGLRVLELGCGTGLPGILAAKCGARVVLTD 147
L G V + GCGTG I A GA V+ +D
Sbjct: 148 LAGATVCDAGCGTGSLAIPLASQGASVLASD 178
>06_01_0503 -
3596664-3596837,3597647-3598069,3598362-3598595,
3598720-3598993,3599390-3599523,3599572-3599634,
3599759-3599846,3599919-3599989,3600898-3601010,
3601836-3602004,3602580-3602671,3602819-3603295,
3603736-3604090
Length = 888
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/50 (28%), Positives = 27/50 (54%), Gaps = 2/50 (4%)
Frame = -2
Query: 397 GKNIKIERQYPQVGK--LRWKVPLRTESVRKNNQKLEVSLQVEDCESRIK 254
G I ++R+ ++ K RWKVP +V N +++ + + +CE+ K
Sbjct: 578 GSKIALQRRVVRLSKPPRRWKVPSYANAVTTNIKEVNIEGRPLNCETGAK 627
>05_04_0096 -
17931061-17931435,17931539-17931620,17932319-17932446,
17932523-17932621,17932739-17932894,17934120-17934194,
17934582-17934749,17934825-17934993,17936640-17936923
Length = 511
Score = 27.5 bits (58), Expect = 9.0
Identities = 18/56 (32%), Positives = 28/56 (50%), Gaps = 1/56 (1%)
Frame = +1
Query: 202 GLVPNRDVQIVGLSWGLFLSEIHNLQPVDLLLASDCF-YEPTQFEEVLSTVAYLLE 366
G V N + +V + WG F L P D+ ++ + Y FE+++S V YL E
Sbjct: 276 GRVTNSERTVVNVEWGSFRPPQIELTPYDICFNNETWNYYDQGFEKMISGV-YLGE 330
>05_01_0013 - 85732-86829
Length = 365
Score = 27.5 bits (58), Expect = 9.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +1
Query: 46 RRHLRGLRVLELGCGTGLPGILAAKCGARVVLTDS 150
RR R + + +LGC TG +L A +L D+
Sbjct: 57 RRQARAIAIADLGCATGPNALLMAGDAVEAMLGDA 91
>04_04_1158 -
31342934-31343272,31343508-31343658,31343745-31343976,
31344173-31344284,31344572-31344690,31344772-31344936,
31345049-31345247,31345351-31345733,31345838-31345902,
31346003-31346047,31346402-31346467,31346707-31346778,
31346907-31346981,31347086-31347157,31347255-31347326,
31347954-31348022,31348109-31348180,31348280-31348351,
31348756-31348827,31349295-31349366,31349528-31349711,
31350082-31350220
Length = 948
Score = 27.5 bits (58), Expect = 9.0
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +1
Query: 7 GSAPLLAWYLWTQRRHLRGLRVLELGCGTGLPGILA 114
G L A +LW Q+R L EL C G P + +
Sbjct: 609 GLVALAAIFLWMQKRRKLSLEQQELYCIVGRPNVFS 644
>04_03_0375 - 15085537-15085827,15086742-15087101,15087127-15087684
Length = 402
Score = 27.5 bits (58), Expect = 9.0
Identities = 19/58 (32%), Positives = 21/58 (36%), Gaps = 1/58 (1%)
Frame = +1
Query: 79 LGCGTGLPGILAAKCGARVVLTDSVALPRSLRHLSSCCEANG-LVPNRDVQIVGLSWG 249
LG G GLPG A G R V+ D A + A G VP WG
Sbjct: 135 LGGGAGLPGSGALAAGVRAVVPDVDATGGEVVAAGGSVSAAGAAVPGDGASAASTHWG 192
>01_06_0896 + 32824105-32825076
Length = 323
Score = 27.5 bits (58), Expect = 9.0
Identities = 17/50 (34%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
Frame = +1
Query: 46 RRHLRGLRVLELGCGTGLPGILAAKCGARVVLTDSV-ALPRSLRHLSSCC 192
R L + + G TGL G + A+C A D V L S R + CC
Sbjct: 204 RTMLAATQEFDDGANTGLAGSVLAQCAAGRAPADCVQCLQDSARAMPRCC 253
>01_03_0148 - 13153782-13154870,13155823-13156672,13156698-13157008
Length = 749
Score = 27.5 bits (58), Expect = 9.0
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = +2
Query: 557 RLWPAQQELLAYMWAIYL 610
++WP + LL Y+W IYL
Sbjct: 132 KVWPPLEYLLKYIWLIYL 149
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,426,941
Number of Sequences: 37544
Number of extensions: 322599
Number of successful extensions: 1073
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 1030
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1072
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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