Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K13
         (617 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U23522-2|AAC46818.1|  521|Caenorhabditis elegans Hypothetical pr...    54   6e-08
CU457741-20|CAO82033.1|  206|Caenorhabditis elegans Hypothetical...    54   8e-08
CU457741-19|CAM36356.1|  167|Caenorhabditis elegans Hypothetical...    53   2e-07
Z66514-2|CAA91342.1|  229|Caenorhabditis elegans Hypothetical pr...    34   0.093
Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical pr...    33   0.22 
Z81581-9|CAN86610.1|  307|Caenorhabditis elegans Hypothetical pr...    32   0.29 
Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical p...    29   2.0  
AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical ...    29   2.0  
AL022473-1|CAJ43448.1|  339|Caenorhabditis elegans Hypothetical ...    29   2.0  
AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear recep...    29   2.0  
U97194-6|AAB52451.2|  244|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF067607-8|AAF98614.1|  144|Caenorhabditis elegans Hypothetical ...    28   6.1  
Z81054-10|CAB02882.3|  561|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z49911-10|CAA90134.1|  471|Caenorhabditis elegans Hypothetical p...    27   8.1  
Z49909-18|CAA90117.1|  471|Caenorhabditis elegans Hypothetical p...    27   8.1  
U41010-3|AAF98587.1|  655|Caenorhabditis elegans Hypothetical pr...    27   8.1  
AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical...    27   8.1  
AC084158-16|AAK68571.2|  347|Caenorhabditis elegans Hypothetical...    27   8.1  

>U23522-2|AAC46818.1|  521|Caenorhabditis elegans Hypothetical
           protein W06B4.2 protein.
          Length = 521

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 44/144 (30%), Positives = 74/144 (51%), Gaps = 8/144 (5%)
 Frame = +1

Query: 13  APLLAWYLWTQRRHLRGLRVLELGCG-TGLPGILAAKCGA-RVVLTDSVALPRSLRHLSS 186
           A + + +L + +  +    VLE+G G TG+ G+  AK GA  V +TD   L  +L  L  
Sbjct: 16  AQVFSDFLCSNQELIEDKLVLEIGAGATGVCGLTTAKLGAANVWMTDHPKLEAALETLQR 75

Query: 187 CCEANGLVPNRDVQIVGLSWG--LFLSEIHNL---QPVDLLLASDCFYEPTQFEEVLSTV 351
             EANG+       + GL W     +S + +    + +D+++ASD F++P+ F  ++ T 
Sbjct: 76  NIEANGVAEK--CIVTGLDWESRASVSAVCDQIGDRHLDVIIASDVFFDPSTFCPLIDTF 133

Query: 352 AYLL-EGTDARFLCSYQERSTDWS 420
           A LL +   A    +YQ R  +W+
Sbjct: 134 AQLLIKFEHATIWFAYQLRDDNWT 157


>CU457741-20|CAO82033.1|  206|Caenorhabditis elegans Hypothetical
           protein C42C1.13b protein.
          Length = 206

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 38/124 (30%), Positives = 60/124 (48%)
 Frame = +1

Query: 10  SAPLLAWYLWTQRRHLRGLRVLELGCGTGLPGILAAKCGARVVLTDSVALPRSLRHLSSC 189
           SA +   Y +   +   G +VLELG GTG+ GI  A  GA V++TD   LP  L  +   
Sbjct: 37  SALMTIHYFFKYPKPFEGKKVLELGSGTGVGGIALAALGADVIITD---LPERLALIEKN 93

Query: 190 CEANGLVPNRDVQIVGLSWGLFLSEIHNLQPVDLLLASDCFYEPTQFEEVLSTVAYLLEG 369
            EAN  +    +++  L W    ++    + +D++LA DC Y    +   +  +  LL  
Sbjct: 94  VEANRKLTGNRIKVQVLDW----TKDRIPEGLDMVLAIDCVY----YNSTIDPLITLLND 145

Query: 370 TDAR 381
            DA+
Sbjct: 146 CDAK 149


>CU457741-19|CAM36356.1|  167|Caenorhabditis elegans Hypothetical
           protein C42C1.13a protein.
          Length = 167

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 36/117 (30%), Positives = 57/117 (48%)
 Frame = +1

Query: 31  YLWTQRRHLRGLRVLELGCGTGLPGILAAKCGARVVLTDSVALPRSLRHLSSCCEANGLV 210
           Y +   +   G +VLELG GTG+ GI  A  GA V++TD   LP  L  +    EAN  +
Sbjct: 5   YFFKYPKPFEGKKVLELGSGTGVGGIALAALGADVIITD---LPERLALIEKNVEANRKL 61

Query: 211 PNRDVQIVGLSWGLFLSEIHNLQPVDLLLASDCFYEPTQFEEVLSTVAYLLEGTDAR 381
               +++  L W    ++    + +D++LA DC Y    +   +  +  LL   DA+
Sbjct: 62  TGNRIKVQVLDW----TKDRIPEGLDMVLAIDCVY----YNSTIDPLITLLNDCDAK 110


>Z66514-2|CAA91342.1|  229|Caenorhabditis elegans Hypothetical
           protein K01A11.2 protein.
          Length = 229

 Score = 33.9 bits (74), Expect = 0.093
 Identities = 17/36 (47%), Positives = 20/36 (55%)
 Frame = +1

Query: 31  YLWTQRRHLRGLRVLELGCGTGLPGILAAKCGARVV 138
           Y+   +    G  VLELGCG  LP IL A  GA+ V
Sbjct: 66  YIEENQTLFAGKSVLELGCGAALPSILTAVHGAKEV 101


>Z12017-8|CAA78050.3|  371|Caenorhabditis elegans Hypothetical
           protein R08D7.4 protein.
          Length = 371

 Score = 32.7 bits (71), Expect = 0.22
 Identities = 37/125 (29%), Positives = 58/125 (46%), Gaps = 10/125 (8%)
 Frame = +1

Query: 67  RVLELGCGTGLPGILAAKCG-ARVVLT---DSV--ALPRSL--RHLSSCCEANGLVPNRD 222
           R+LELG G G+ GI  AK     V LT   D+V   L  ++    L S  E +    N  
Sbjct: 188 RILELGSGCGVSGIAIAKMNDCCVTLTDYDDNVLNLLEENIAKNDLKSDTE-DSSANNNQ 246

Query: 223 VQIVGLSWGLF-LSEIHNLQPVDLLLASDCFYEPTQFEEVLSTVAYLLEGTDARFL-CSY 396
             +  L+W  F  SE    +P DL++A+D  Y+      + + +  LL  + A  + C+ 
Sbjct: 247 ATVRSLNWCDFDFSEWK--EPTDLIIAADVVYDTALLASLCNVLNLLLRHSKAAIVACTR 304

Query: 397 QERST 411
           +  S+
Sbjct: 305 RNESS 309


>Z81581-9|CAN86610.1|  307|Caenorhabditis elegans Hypothetical
           protein T02E1.5a protein.
          Length = 307

 Score = 32.3 bits (70), Expect = 0.29
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 3/40 (7%)
 Frame = +1

Query: 37  WTQRRHLRGLRVLELGCGTGLPGILA---AKCGARVVLTD 147
           W  R+ +RG  VL  G G+GL  ++A    K GAR+VL D
Sbjct: 31  WLLRKDVRGQTVLITGSGSGLGRLMAFEFGKLGARLVLWD 70


>Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 543 DSSSIGYGQHSKSCSPICGQFTLDS 617
           D++   Y +HS SCSP   Q+T DS
Sbjct: 414 DANDDSYLEHSASCSPTDSQYTTDS 438


>AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 543 DSSSIGYGQHSKSCSPICGQFTLDS 617
           D++   Y +HS SCSP   Q+T DS
Sbjct: 414 DANDDSYLEHSASCSPTDSQYTTDS 438


>AL022473-1|CAJ43448.1|  339|Caenorhabditis elegans Hypothetical
           protein H27C11.1b protein.
          Length = 339

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 543 DSSSIGYGQHSKSCSPICGQFTLDS 617
           D++   Y +HS SCSP   Q+T DS
Sbjct: 314 DANDDSYLEHSASCSPTDSQYTTDS 338


>AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear receptor
           NHR-97 protein.
          Length = 439

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = +3

Query: 543 DSSSIGYGQHSKSCSPICGQFTLDS 617
           D++   Y +HS SCSP   Q+T DS
Sbjct: 414 DANDDSYLEHSASCSPTDSQYTTDS 438


>U97194-6|AAB52451.2|  244|Caenorhabditis elegans Hypothetical
           protein C37A2.6 protein.
          Length = 244

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/44 (25%), Positives = 24/44 (54%)
 Frame = +1

Query: 22  LAWYLWTQRRHLRGLRVLELGCGTGLPGILAAKCGARVVLTDSV 153
           L+ ++   +   +G  +++ G G G   I A+ CGA+ +L + +
Sbjct: 64  LSRFILDNKPLFQGSEIVDFGAGCGSASISASICGAKKILANDI 107


>AF067607-8|AAF98614.1|  144|Caenorhabditis elegans Hypothetical
           protein C18H7.9 protein.
          Length = 144

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 52  HLRGLRVLELGCGTGLPGILAAKCGARVVL 141
           +L+  +VL++GCG GL      + GAR V+
Sbjct: 35  NLKDKKVLDIGCGNGLNSTTFLQWGARKVV 64


>Z81054-10|CAB02882.3|  561|Caenorhabditis elegans Hypothetical
           protein F01D4.3 protein.
          Length = 561

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/73 (26%), Positives = 34/73 (46%)
 Frame = -2

Query: 373 QYPQVGKLRWKVPLRTESVRKNNQKLEVSLQVEDCESRIKRGPTIGRLFARHGWVPSRWL 194
           +YP   K + K   R   V  + +K++V    ED + +++           HG++P   L
Sbjct: 107 KYPDGDKKKKKKKTRRARVSVSMEKVDVVTDREDKKMKLRE------FNFYHGFLPREDL 160

Query: 193 HNTMINVAEILAR 155
           H+T+ N  + L R
Sbjct: 161 HSTLHNSGDYLIR 173


>Z49911-10|CAA90134.1|  471|Caenorhabditis elegans Hypothetical
           protein C14A4.13 protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 400 PGKNIKIERQYPQVGKLRWKVPLRTESVRKNNQKL 296
           PG  +  ER +PQ G+   + P+R ESV K++  +
Sbjct: 340 PGGKVYTERDFPQPGE---QEPMRDESVSKSDDTI 371


>Z49909-18|CAA90117.1|  471|Caenorhabditis elegans Hypothetical
           protein C14A4.13 protein.
          Length = 471

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 13/35 (37%), Positives = 21/35 (60%)
 Frame = -2

Query: 400 PGKNIKIERQYPQVGKLRWKVPLRTESVRKNNQKL 296
           PG  +  ER +PQ G+   + P+R ESV K++  +
Sbjct: 340 PGGKVYTERDFPQPGE---QEPMRDESVSKSDDTI 371


>U41010-3|AAF98587.1|  655|Caenorhabditis elegans Hypothetical
           protein T05A12.3 protein.
          Length = 655

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 17/75 (22%), Positives = 33/75 (44%)
 Frame = -1

Query: 311 KQSEARSKSTG*RL*ISDKKRPHDRPTICTSRLGTKPLASQHDDKCRRDLGKATLSVRTT 132
           K+ + R +    +L I +K+R   R    +S+  +KP +S H++      G +  + +  
Sbjct: 320 KEKQERQREVE-KLRIKEKEREKARAASSSSQKSSKPSSSSHNNGSTSSNGHSAPAKKEV 378

Query: 131 RAPHFAAKIPGKPVP 87
           R P      P   +P
Sbjct: 379 RKPFQKGPTPPPLIP 393


>AL110477-12|CAB54335.1|  348|Caenorhabditis elegans Hypothetical
           protein Y113G7B.17 protein.
          Length = 348

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 11/23 (47%), Positives = 17/23 (73%)
 Frame = +1

Query: 70  VLELGCGTGLPGILAAKCGARVV 138
           V+++G GTG+  + AAK GA+ V
Sbjct: 66  VMDVGSGTGILSMFAAKAGAKKV 88


>AC084158-16|AAK68571.2|  347|Caenorhabditis elegans Hypothetical
           protein Y69A2AR.26 protein.
          Length = 347

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 160 ARQRCLSEQRAHHTSPPRSQVNLFR 86
           +R +CL+E   H   P R  ++LF+
Sbjct: 263 SRAKCLTEMLQHRNDPERQSISLFK 287


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,717,844
Number of Sequences: 27780
Number of extensions: 272150
Number of successful extensions: 827
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 792
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 827
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1342816466
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)