Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K12
         (467 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0912 - 24238659-24238897,24239353-24239462,24239548-242397...    30   1.1  
02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,513...    30   1.1  
11_01_0049 - 375049-375342,375596-375660,375907-375956,376492-37...    29   1.9  
01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480     28   3.3  
08_02_1091 + 24256025-24256190,24256806-24257978,24258066-242587...    27   5.7  
04_04_0329 + 24449574-24449633,24450261-24450320,24450510-244505...    27   5.7  
02_05_1134 - 34352154-34352375,34353683-34353746,34353820-343548...    27   7.5  

>12_02_0912 -
           24238659-24238897,24239353-24239462,24239548-24239741,
           24239839-24239907,24240096-24240282,24240683-24240969,
           24241593-24241880
          Length = 457

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 22/71 (30%), Positives = 30/71 (42%)
 Frame = -3

Query: 285 RLSAVYLCVHSYNYS*HKRCQRTSVSLRSYWRRSVRTSRWYSREDTLSYVPPPLSIALNQ 106
           R   +Y  + S+ Y     C    V + S W RS   + W   E T    PP  + AL  
Sbjct: 197 RCKILYYSIFSWLYGLVGSCAHL-VMVNSSWTRSHIENIWRIPERTRRVYPPCDTSALQM 255

Query: 105 VCLDGS*RPPI 73
           + L+ S  PPI
Sbjct: 256 LPLERSTTPPI 266


>02_01_0689 + 5137506-5137591,5138641-5138709,5139489-5139580,
            5139967-5140289,5141373-5142479,5142593-5143279,
            5144214-5144522,5145488-5145823,5146165-5146263,
            5146676-5146940,5146950-5147104,5147666-5149723,
            5150168-5150367,5150662-5150718,5150965-5151079
          Length = 1985

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 20/73 (27%), Positives = 38/73 (52%)
 Frame = +3

Query: 99   DKPDLKQLKAEAARKKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKDTLR 278
            D+P +K  K++   K +   +C++V  EP    K  + P  F  +C     N  +K+T++
Sbjct: 1638 DEPKVKVTKSDTKEKDSL--ECSSV-IEPSSDRKLMQCPYDFEEICRKFVTNDSNKETVK 1694

Query: 279  KVGDGECAGSDGI 317
            ++G     GS+G+
Sbjct: 1695 QIG---LNGSNGV 1704


>11_01_0049 -
           375049-375342,375596-375660,375907-375956,376492-376541
          Length = 152

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 16/37 (43%), Positives = 22/37 (59%), Gaps = 2/37 (5%)
 Frame = +3

Query: 72  LLVAVSCRPDKPDLKQLKAEAARK--KACLHDCTNVK 176
           L +  SC+P + DL  L AEA+RK  K+  H C  +K
Sbjct: 88  LKIVPSCQPSRKDL--LSAEASRKGTKSIDHPCNTIK 122


>01_06_0360 - 28729006-28729446,28729810-28730258,28730499-28731480
          Length = 623

 Score = 28.3 bits (60), Expect = 3.3
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = -3

Query: 198 YWRRSVRTSRWYSREDTLSYV 136
           YW+ +++TS WY++  T S+V
Sbjct: 475 YWQPTMKTSDWYTKSCTYSWV 495


>08_02_1091 +
           24256025-24256190,24256806-24257978,24258066-24258733,
           24258994-24260065,24260241-24260563,24260647-24260835,
           24261400-24261506,24262103-24262163,24262617-24262634
          Length = 1258

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 12/43 (27%), Positives = 21/43 (48%)
 Frame = +3

Query: 141 KKACLHDCTNVKFEPICASKNGEKPKSFGSVCVMNNYNCEHKD 269
           ++AC  +C+N +    C   +  +P S G + + N  NC   D
Sbjct: 729 QQACASNCSNKELGEKCIHDDPGQPVSDGHIPLQNGDNCADFD 771


>04_04_0329 +
           24449574-24449633,24450261-24450320,24450510-24450562,
           24450913-24450973,24451481-24451666,24451877-24451984,
           24452196-24453418,24453571-24454405
          Length = 861

 Score = 27.5 bits (58), Expect = 5.7
 Identities = 18/50 (36%), Positives = 23/50 (46%), Gaps = 5/50 (10%)
 Frame = +3

Query: 87  SCRPDKPDLKQLKAEAARKKACL--HDCTNVKFEPICAS---KNGEKPKS 221
           S  PD P LK L+  +     CL  +  + V FE  CA    K+G K  S
Sbjct: 416 SAPPDSPKLKYLRISSLNSSKCLVTNGVSTVLFEDTCAEDDIKDGGKVAS 465


>02_05_1134 - 34352154-34352375,34353683-34353746,34353820-34354859,
            34355193-34355261,34355502-34355606,34355992-34356161,
            34356244-34356351,34356397-34356525,34356577-34356681,
            34357186-34357475,34357575-34357679,34358195-34358289,
            34358474-34358569,34358660-34358782,34359120-34359174,
            34359254-34359417,34359881-34359971,34360180-34360334,
            34360823-34361002,34361314-34361487,34361776-34361917,
            34362023-34362325,34362443-34362522
          Length = 1354

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 340  CSLN*ERRIPSEPAHSPSPTFR 275
            CS    +R PS PA  PSP F+
Sbjct: 1287 CSAEWRKRWPSPPARQPSPGFK 1308


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,682,765
Number of Sequences: 37544
Number of extensions: 239194
Number of successful extensions: 595
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 595
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 943260316
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)