Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K12
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          25   0.31 
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   2.9  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      21   6.6  
AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex det...    21   8.7  
AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex det...    21   8.7  
AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex det...    21   8.7  
AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex det...    21   8.7  
AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex det...    21   8.7  
AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex det...    21   8.7  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            21   8.7  

>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 25.4 bits (53), Expect = 0.31
 Identities = 19/58 (32%), Positives = 28/58 (48%)
 Frame = -3

Query: 312 RRNQHTRHRRLSAVYLCVHSYNYS*HKRCQRTSVSLRSYWRRSVRTSRWYSREDTLSY 139
           + N+ T HR + AV +          K+   +S SLRS  R   RTS  +SR + L +
Sbjct: 182 KTNEITEHRTVLAVNIEKSENETKTCKKYAISSNSLRSRSRSFQRTSSCHSRYEDLRH 239


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 17/66 (25%), Positives = 30/66 (45%), Gaps = 1/66 (1%)
 Frame = +3

Query: 78  VAVSCRPDKPDLKQLKAEAARKKACLHDCTNVKFEPICA-SKNGEKPKSFGSVCVMNNYN 254
           V++S  P +P   ++     ++    +      FEP    S++ ++ K   S     NYN
Sbjct: 133 VSLSSPPREPGTPRINFTKLKRHHPRYKRPRTTFEPRATDSRHYDRYKEEES---NENYN 189

Query: 255 CEHKDT 272
            EHK+T
Sbjct: 190 WEHKET 195


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -2

Query: 94  RQLTATNKTAKIMRVSAFIFSTIQT 20
           R L++  KTA+++RVS       QT
Sbjct: 98  RSLSSFLKTAEVLRVSGLTQQADQT 122


>AY569710-1|AAS86663.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 234 KRCQRTSVSLRSYWRRSVRTSRWYSREDTLS 142
           K+   +S SLRS       TS  YSRE + S
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSHYSRERSCS 238


>AY569709-1|AAS86662.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 234 KRCQRTSVSLRSYWRRSVRTSRWYSREDTLS 142
           K+   +S SLRS       TS  YSRE + S
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSHYSRERSCS 238


>AY569708-1|AAS86661.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 234 KRCQRTSVSLRSYWRRSVRTSRWYSREDTLS 142
           K+   +S SLRS       TS  YSRE + S
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSHYSRERSCS 238


>AY569707-1|AAS86660.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 234 KRCQRTSVSLRSYWRRSVRTSRWYSREDTLS 142
           K+   +S SLRS       TS  YSRE + S
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSHYSRERSCS 238


>AY569706-1|AAS86659.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 234 KRCQRTSVSLRSYWRRSVRTSRWYSREDTLS 142
           K+   +S SLRS       TS  YSRE + S
Sbjct: 197 KKYATSSNSLRSRTHGFQHTSSHYSRERSCS 227


>AY569705-1|AAS86658.1|  419|Apis mellifera complementary sex
           determiner protein.
          Length = 419

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 234 KRCQRTSVSLRSYWRRSVRTSRWYSREDTLS 142
           K+   +S SLRS       TS  YSRE + S
Sbjct: 208 KKYATSSNSLRSRTHGFQHTSSHYSRERSCS 238


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 7/13 (53%), Positives = 9/13 (69%)
 Frame = +3

Query: 216 KSFGSVCVMNNYN 254
           K+F   C +NNYN
Sbjct: 150 KNFHPRCAVNNYN 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 128,966
Number of Sequences: 438
Number of extensions: 3192
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)