Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K10
         (626 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   283   5e-77
AF164625-1|AAD47816.1|  944|Caenorhabditis elegans tandem-array-...    31   0.51 
AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array ...    31   0.51 
Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical pr...    31   0.67 
Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical pr...    31   0.67 
M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical pr...    29   2.7  
M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical pr...    29   2.7  
AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical ...    29   2.7  
Z75542-1|CAA99859.1|  141|Caenorhabditis elegans Hypothetical pr...    29   3.6  
Z81496-4|CAI79124.1|   77|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical pr...    28   6.3  
Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U53180-7|AAA96289.1|  425|Caenorhabditis elegans Hypothetical pr...    27   8.3  
U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical p...    27   8.3  
AL132948-6|CAC51070.1|  395|Caenorhabditis elegans Hypothetical ...    27   8.3  
AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine re...    27   8.3  
AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid deplete...    27   8.3  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  283 bits (695), Expect = 5e-77
 Identities = 130/205 (63%), Positives = 158/205 (77%)
 Frame = +2

Query: 11  KKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVLKIV 190
           KKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  KI+
Sbjct: 5   KKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAKKIL 64

Query: 191 KQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCN 370
            QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +KLC 
Sbjct: 65  TQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFKLCK 124

Query: 371 VRRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMITG 550
           V+ V T  K VP L T DGRT+RYPDP +KVND++  +IST KI D +KF+ GNL  +TG
Sbjct: 125 VKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAYVTG 184

Query: 551 GRNLGRVGTIVSRERHPGSFDIVHV 625
           GRN+GRVG I  RER PG+ DI+H+
Sbjct: 185 GRNVGRVGIIGHRERLPGASDIIHI 209


>AF164625-1|AAD47816.1|  944|Caenorhabditis elegans
           tandem-array-modifier protein protein.
          Length = 944

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +1

Query: 328 PPYHT*RSQVQAVQCAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAAR--HLHQQD 501
           PP H    ++       R ++P    V G   +     P P H   + G  R  ++HQQ 
Sbjct: 423 PPQHMQAQRLWGGPQPQRMNQPMMAQVGGRPGQYIMGHPPPMHHQMQQGPPRMMYMHQQH 482

Query: 502 HGLHQVRLRQPLHDHRRQE 558
           H +HQV   Q    H+R +
Sbjct: 483 HPMHQVE-DQMQRQHQRMQ 500


>AF022974-6|AAC48041.1|  944|Caenorhabditis elegans Tandem array
           expression modifierprotein 1 protein.
          Length = 944

 Score = 31.5 bits (68), Expect = 0.51
 Identities = 22/79 (27%), Positives = 33/79 (41%), Gaps = 2/79 (2%)
 Frame = +1

Query: 328 PPYHT*RSQVQAVQCAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAAR--HLHQQD 501
           PP H    ++       R ++P    V G   +     P P H   + G  R  ++HQQ 
Sbjct: 423 PPQHMQAQRLWGGPQPQRMNQPMMAQVGGRPGQYIMGHPPPMHHQMQQGPPRMMYMHQQH 482

Query: 502 HGLHQVRLRQPLHDHRRQE 558
           H +HQV   Q    H+R +
Sbjct: 483 HPMHQVE-DQMQRQHQRMQ 500


>Z68507-7|CAA92830.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -3

Query: 351 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 193
           A+S  +R +V+  F   I+ +   +FS + T +NP+G   S R  P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214


>Z68297-7|CAA92597.1| 1646|Caenorhabditis elegans Hypothetical
           protein F11A10.4 protein.
          Length = 1646

 Score = 31.1 bits (67), Expect = 0.67
 Identities = 19/53 (35%), Positives = 29/53 (54%)
 Frame = -3

Query: 351 ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRC 193
           A+S  +R +V+  F   I+ +   +FS + T +NP+G   S R  P TL R C
Sbjct: 165 AASAAVRQLVSTVFERVIQEDG--IFSTELTVVNPSGGRPSPRAAPPTL-RPC 214


>M98552-2|AAL11480.1|  921|Caenorhabditis elegans Hypothetical
           protein ZK370.3b protein.
          Length = 921

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -2

Query: 220 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 128
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>M98552-1|AAA28205.2|  927|Caenorhabditis elegans Hypothetical
           protein ZK370.3a protein.
          Length = 927

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 9/31 (29%), Positives = 23/31 (74%)
 Frame = -2

Query: 220 FPVHFDETLLHNLKHLIAGERVLEPISQEDH 128
           +P H  ++ ++NL ++++ ER+ EP++ +D+
Sbjct: 567 YPPHLAQSAMNNLVNILSNERLDEPLATKDN 597


>AL132902-6|CAC14421.1|  316|Caenorhabditis elegans Hypothetical
           protein Y71A12B.6 protein.
          Length = 316

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = -3

Query: 309 TSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMR 199
           T+     N F FS  T S+NP GY+  V     TL +
Sbjct: 236 TASCNGTNEFTFSDPTLSLNPTGYIWGVDQPSGTLAK 272


>Z75542-1|CAA99859.1|  141|Caenorhabditis elegans Hypothetical
           protein F55D12.1 protein.
          Length = 141

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 23/77 (29%), Positives = 32/77 (41%), Gaps = 4/77 (5%)
 Frame = +1

Query: 310 ERKVHYPPYHT*RSQVQAVQCAARRD-RPQERAVPGDARRAHAPVPGPAHQGERLGAA-- 480
           ERK  +PP +    + + V C  RR+   QE++ P    R   P   P  + E    A  
Sbjct: 12  ERKSPHPPQNVISERREFVSCEYRREPLHQEQSRPSSILRNPLPQSHPYEERENARLACE 71

Query: 481 -RHLHQQDHGLHQVRLR 528
            R   Q +HG     LR
Sbjct: 72  YRRDQQSEHGQLACELR 88


>Z81496-4|CAI79124.1|   77|Caenorhabditis elegans Hypothetical
           protein F09C6.13 protein.
          Length = 77

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +2

Query: 515 KFDSGNLCMITGGRNLGRVGTIVSRERHPGSFDIVHV 625
           K DSGN  + T  R++ R+   V  E H    D+ H+
Sbjct: 12  KVDSGNTTINTTNRSINRIDNSVDYESHGLDTDLEHL 48


>Z68011-3|CAA92014.2|  821|Caenorhabditis elegans Hypothetical
           protein T21B6.3 protein.
          Length = 821

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 18/69 (26%), Positives = 30/69 (43%)
 Frame = +1

Query: 352 QVQAVQCAARRDRPQERAVPGDARRAHAPVPGPAHQGERLGAARHLHQQDHGLHQVRLRQ 531
           ++Q   C AR    +  A P       AP   P+ Q ++    +   +Q H  HQ RL+Q
Sbjct: 187 KIQRRGCPARSAPQRVPAPPAQQYAPRAP-EYPSAQQQQQQREQQQREQQHREHQARLQQ 245

Query: 532 PLHDHRRQE 558
                ++Q+
Sbjct: 246 HQQQQQQQQ 254


>Z74042-9|CAA98526.1|  325|Caenorhabditis elegans Hypothetical
           protein T11F9.10 protein.
          Length = 325

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/22 (54%), Positives = 16/22 (72%), Gaps = 1/22 (4%)
 Frame = +3

Query: 327 STVSHLK-KPSTSCAMCGASRP 389
           +TV HL  +P TSCA C ++RP
Sbjct: 19  TTVLHLHIRPPTSCATCTSNRP 40


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 16/50 (32%), Positives = 26/50 (52%), Gaps = 6/50 (12%)
 Frame = +2

Query: 314 GRFTIHRITPEEAKYKLCNVRRVATGPKSVP-----YLVTHDGRTLR-YP 445
           G+  + R+T  E  Y+ C +++ A   K VP     Y+V H  R ++ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>U53180-7|AAA96289.1|  425|Caenorhabditis elegans Hypothetical
           protein D1014.2 protein.
          Length = 425

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +2

Query: 434 LRYPDPLIKVNDSVQLDISTNKIMDFIKFDSGNLCMI 544
           L +PD LIK+    Q++ STN    F+ +D   L ++
Sbjct: 34  LLFPDFLIKIRLLFQMNASTNATTTFVPWDHKTLQIV 70


>U50301-10|AAV28351.1|  513|Caenorhabditis elegans Hypothetical
           protein F20D6.12 protein.
          Length = 513

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 2/50 (4%)
 Frame = -3

Query: 381 TRRTLHSLYL--ASSGVIRWIVNLPFTSYIKRNNSFVFSMDTTSINPAGY 238
           T R    LYL       I +I+ L   S++K NNSF+F      I+   Y
Sbjct: 15  TWRLYDPLYLIFCIPATIHYIIVLKVVSHLKENNSFLFIFTILGISDIFY 64


>AL132948-6|CAC51070.1|  395|Caenorhabditis elegans Hypothetical
           protein Y39B6A.7 protein.
          Length = 395

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/45 (28%), Positives = 25/45 (55%)
 Frame = +2

Query: 248 GFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYKLCNVRRV 382
           GF DV+S+ + ++L    +D++  F  H+I     + +  N+ RV
Sbjct: 235 GFTDVISMIQRDKLNEKFFDMRFFFVSHQIDRVARRLEELNITRV 279


>AF022980-5|AAG24192.1|  328|Caenorhabditis elegans Serpentine
           receptor, class j protein45 protein.
          Length = 328

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 15/60 (25%), Positives = 29/60 (48%)
 Frame = -3

Query: 321 NLPFTSYIKRNNSFVFSMDTTSINPAGYVGSVRTFPSTLMRRCFTILSTSLPVSAYLSRF 142
           N     YI+ +    F +D+T  N  G + SV ++ +T      TI  +++ +++  S F
Sbjct: 156 NFELLQYIREDFQETFGLDSTEFNMVGALFSVGSYETTHRAWIATISWSAVSIASITSFF 215


>AC006834-7|AAF40003.2|  176|Caenorhabditis elegans Lipid depleted
           protein 5 protein.
          Length = 176

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 12/45 (26%), Positives = 25/45 (55%)
 Frame = +2

Query: 374 RRVATGPKSVPYLVTHDGRTLRYPDPLIKVNDSVQLDISTNKIMD 508
           R ++TG  ++P   +HD + +   D L K +    + +S+++ MD
Sbjct: 18  RCLSTGKDNLPVTRSHDAKKVELNDILDKPSQKTPVKVSSDETMD 62


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,677,127
Number of Sequences: 27780
Number of extensions: 295405
Number of successful extensions: 1033
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 988
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1032
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)