Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K05
         (465 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr 2...    28   0.61 
SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|...    27   1.9  
SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase Prp16|...    25   4.3  
SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr ...    25   5.7  
SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   7.5  
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro...    24   9.9  

>SPBC2A9.03 |||conserved protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 426

 Score = 28.3 bits (60), Expect = 0.61
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 179 DDNLYAFKNFYTNSTCTKNHLH 114
           +D+ Y F+ F  N  C +NH H
Sbjct: 115 EDSFYEFQRFLKNPNCLRNHHH 136


>SPCC1020.11c |||DUF786 family protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 102

 Score = 26.6 bits (56), Expect = 1.9
 Identities = 15/42 (35%), Positives = 21/42 (50%)
 Frame = +3

Query: 198 NFCLFYSSGYHIF*LRVLDYEPSIIVINSATRADFYILGYGK 323
           N   +Y  GY  +  ++LD  PS ++    T   FY L YGK
Sbjct: 54  NLTKYYQPGYKFWIAKILDGAPSYVL----TWTLFYSLVYGK 91


>SPBC1711.17 |prp16|SPBC17G9.01|ATP-dependent RNA helicase
            Prp16|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1173

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 9/17 (52%), Positives = 13/17 (76%)
 Frame = -2

Query: 158  KNFYTNSTCTKNHLHKK 108
            +N Y+NS C+K+ LH K
Sbjct: 980  RNGYSNSWCSKHFLHSK 996


>SPAC631.02 |||bromodomain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 727

 Score = 25.0 bits (52), Expect = 5.7
 Identities = 12/37 (32%), Positives = 20/37 (54%)
 Frame = -3

Query: 457 ARRQRLGSQDQRPRSPALNSHVHPHLQHRPPHRSLGF 347
           +++  L  Q++   S +L+SH HP  + R    SL F
Sbjct: 119 SKKHSLQLQEEEKSSESLDSHTHPPKRVRNEDDSLTF 155


>SPAC31G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 234

 Score = 24.6 bits (51), Expect = 7.5
 Identities = 13/28 (46%), Positives = 15/28 (53%), Gaps = 2/28 (7%)
 Frame = -2

Query: 128 KNHLHKKH--CYKML*TLYIFTPLLNIF 51
           KNHLH KH   Y +L   Y+  P   IF
Sbjct: 58  KNHLHNKHVSLYCLLSDRYLQPPSKRIF 85


>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
           protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1385

 Score = 24.2 bits (50), Expect = 9.9
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 455 APPKVGVTGPETPVTSPE 402
           APP V  +  ETP++ PE
Sbjct: 751 APPNVSGSPSETPISKPE 768


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,848,642
Number of Sequences: 5004
Number of extensions: 36652
Number of successful extensions: 73
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 72
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 73
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 176367270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)