Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K05
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0042 - 10015657-10017840                                         29   1.4  
02_05_0856 - 32272757-32273494,32273578-32273866,32273961-322743...    29   1.8  
10_08_0348 + 17051521-17052092,17055173-17055998                       29   2.4  
03_02_0339 - 7623897-7625837                                           28   4.3  
02_03_0343 + 17961977-17962596,17962670-17963015,17965933-179662...    28   4.3  
12_02_0908 - 24214221-24215933                                         27   5.6  
06_01_0318 - 2284481-2284594,2285340-2286044,2286589-2286609,228...    27   9.8  

>10_06_0042 - 10015657-10017840
          Length = 727

 Score = 29.5 bits (63), Expect = 1.4
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = +3

Query: 339 SI*KPNERWGGRCWRCGWT 395
           S+ KP E  G RCW C WT
Sbjct: 394 SLSKPEEDAGRRCWCCRWT 412


>02_05_0856 -
           32272757-32273494,32273578-32273866,32273961-32274312,
           32275232-32275850
          Length = 665

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/27 (48%), Positives = 16/27 (59%)
 Frame = -3

Query: 436 SQDQRPRSPALNSHVHPHLQHRPPHRS 356
           SQ QRPR+P+L  +  PH  H  P  S
Sbjct: 48  SQQQRPRAPSLLCNKQPHAPHPWPPSS 74


>10_08_0348 + 17051521-17052092,17055173-17055998
          Length = 465

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 11/70 (15%)
 Frame = +3

Query: 252 DYEPSIIVI----NSATRADFYILGYGKLEFSASI*KPNERW-------GGRCWRCGWTC 398
           D EPS + +    N++  + +Y+LGY  +E    + +P +R        G +C  C WT 
Sbjct: 370 DLEPSRMTLHRFGNTSASSVWYVLGY--MEAKRRL-RPGDRVLMLTFGAGFKCNSCVWTV 426

Query: 399 EFRAGDRGLW 428
           E    D G+W
Sbjct: 427 EKPVSDAGVW 436


>03_02_0339 - 7623897-7625837
          Length = 646

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 9/15 (60%), Positives = 10/15 (66%)
 Frame = -2

Query: 146 TNSTCTKNHLHKKHC 102
           T   CT+NHLH  HC
Sbjct: 545 TKFACTENHLHVSHC 559


>02_03_0343 +
           17961977-17962596,17962670-17963015,17965933-17966291,
           17966384-17966636
          Length = 525

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/38 (44%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = -3

Query: 460 TARRQRLGSQDQR--PRSPALNSHVHPHLQHRPPHRSL 353
           TARR+R G    R  P  P L    H HL  +P HR+L
Sbjct: 20  TARRRRSGRLRLRLPPEPPGLPLVGHLHLFRKPLHRTL 57


>12_02_0908 - 24214221-24215933
          Length = 570

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = -3

Query: 445 RLGSQDQRPRSPALNSHVHPHLQHRPPHRSL 353
           RLG     P  PA+    H HL  +P HRSL
Sbjct: 79  RLGDGGAAPSPPAMPVLGHLHLIKKPLHRSL 109


>06_01_0318 -
           2284481-2284594,2285340-2286044,2286589-2286609,
           2287186-2287257,2287762-2287842,2288059-2288133,
           2288197-2288484
          Length = 451

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -3

Query: 460 TARRQRLGSQDQRPRSPALNSHVHPHLQHRPPHRS 356
           T    RLGS D   R P++ + +      R PHR+
Sbjct: 214 TGDSSRLGSDDTARRPPSVKASLSVSFGQRAPHRA 248


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,652,343
Number of Sequences: 37544
Number of extensions: 217421
Number of successful extensions: 520
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 514
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 520
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)