Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K05
         (465 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL117204-12|CAB55127.1|  385|Caenorhabditis elegans Hypothetical...    28   3.8  
Z46934-9|CAD18881.1|  204|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AL132948-34|CAD31836.1|  248|Caenorhabditis elegans Hypothetical...    27   6.6  
AF036702-13|AAB88379.2|  648|Caenorhabditis elegans Hypothetical...    27   6.6  

>AL117204-12|CAB55127.1|  385|Caenorhabditis elegans Hypothetical
           protein Y116A8C.21 protein.
          Length = 385

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = -2

Query: 188 PNFDDNLYAFKNFYTNSTCTKNHLHKKHCYKML*TLYIFTPLLNIFIISLSFVERHIT 15
           PN  +N   FK+ Y    C KN  H+++       + I+  L  + +I + F+  ++T
Sbjct: 292 PNIRNNFEIFKSLYFFQFCNKNCKHQQN-------VPIYRTLFGVTVIPMGFLFENVT 342


>Z46934-9|CAD18881.1|  204|Caenorhabditis elegans Hypothetical
          protein ZK1320.11 protein.
          Length = 204

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 7  GFRVMWRSTKLSEIIKIFKSGV 72
          G  +M  + KL E++ IFKSGV
Sbjct: 6  GIEIMIPNDKLDEVVSIFKSGV 27


>AL132948-34|CAD31836.1|  248|Caenorhabditis elegans Hypothetical
           protein Y39B6A.46 protein.
          Length = 248

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 190 YPISMTIYMHSKIFTLTQHVQRTTSIRNTAIKCYKLYTSS 71
           +P    +Y H K      H QR  +I+  +I+C K   SS
Sbjct: 183 FPNRKALYRHGKQTNHQTHFQRGMNIKGGSIRCEKCEYSS 222


>AF036702-13|AAB88379.2|  648|Caenorhabditis elegans Hypothetical
           protein F33D4.6b protein.
          Length = 648

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/29 (31%), Positives = 16/29 (55%)
 Frame = -2

Query: 176 DNLYAFKNFYTNSTCTKNHLHKKHCYKML 90
           ++ Y  +N+Y   TC ++H +   C K L
Sbjct: 617 EHCYFIENYYPALTCARSHAYVAKCQKWL 645


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,199,774
Number of Sequences: 27780
Number of extensions: 202207
Number of successful extensions: 483
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 483
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)