Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_K02
(226 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC569.05c |||spermidine family transporter |Schizosaccharomyce... 26 0.77
SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr 1|... 25 1.3
SPAC222.15 |meu13|SPAC821.01|Tat binding protein 1|Schizosacchar... 24 2.4
SPBC1347.10 |cdc23|mcm10|MCM-associated protein Mcm10|Schizosacc... 24 3.1
SPBC36.02c |||spermidine family transporter |Schizosaccharomyces... 24 3.1
SPAC3H1.04c |mdm31||mitochondrial inner membrane protein Mdm31|S... 24 3.1
SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces pomb... 23 4.1
SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr 1|||... 23 4.1
SPAC1006.02 |||WD repeat protein, human GNB1L family|Schizosacch... 23 4.1
SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomy... 23 4.1
SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyc... 23 5.4
SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr 1|||M... 23 5.4
SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces pombe... 23 5.4
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 23 5.4
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce... 23 5.4
SPBC887.09c |||leucine-rich repeat protein Sog2 |Schizosaccharom... 23 7.2
SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces... 22 9.5
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 22 9.5
SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomy... 22 9.5
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb... 22 9.5
>SPCC569.05c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 576
Score = 25.8 bits (54), Expect = 0.77
Identities = 14/33 (42%), Positives = 17/33 (51%)
Frame = -3
Query: 212 TLSGLKFSCTCFLISTNCFSISLNALPVLAASA 114
TLSGL C LI C + ++A AASA
Sbjct: 478 TLSGLATGCGILLIFLQCLNYLIDAYLFRAASA 510
>SPAC3H1.02c |||metallopeptidase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1036
Score = 25.0 bits (52), Expect = 1.3
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -3
Query: 209 LSGLKFSCTCFLISTNCFSISLNALPVLAASASRFTK 99
L GLK C F S+N ++ ++L + + +FT+
Sbjct: 968 LEGLKIYCLPFFSSSNNLAVITSSLAKIEQTVEQFTE 1004
>SPAC222.15 |meu13|SPAC821.01|Tat binding protein
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 216
Score = 24.2 bits (50), Expect = 2.4
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 109 RDAEAASTGNAFSEIEKQFVEIKKQV 186
+D AA+T +E+EKQ E+K +V
Sbjct: 78 QDDLAAATPEELAEMEKQIQELKDEV 103
>SPBC1347.10 |cdc23|mcm10|MCM-associated protein
Mcm10|Schizosaccharomyces pombe|chr 2|||Manual
Length = 593
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = -3
Query: 221 CFLTLSGLKFSCTCFL 174
C LTL+ LK+ CFL
Sbjct: 226 CMLTLTDLKWQLECFL 241
>SPBC36.02c |||spermidine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 577
Score = 23.8 bits (49), Expect = 3.1
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = -3
Query: 209 LSGLKFSCTCFLISTNCFSISLNALPVLAASA 114
LSGL C LI C + ++A AASA
Sbjct: 480 LSGLATGCGILLIFLQCINYLIDAYLFRAASA 511
>SPAC3H1.04c |mdm31||mitochondrial inner membrane protein
Mdm31|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 23.8 bits (49), Expect = 3.1
Identities = 9/28 (32%), Positives = 17/28 (60%)
Frame = +1
Query: 124 ASTGNAFSEIEKQFVEIKKQVQENFKPD 207
A N S+ EK+++ ++K+ N +PD
Sbjct: 221 AQNPNNKSDYEKEYMALRKRYDSNEEPD 248
>SPCC188.12 |spn6|SPCC584.09|septin Spn6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 380
Score = 23.4 bits (48), Expect = 4.1
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = -3
Query: 155 SISLNALPVLAASASRFTKA*TLIKQTARNIIKCLFILKSLPTT 24
S +N +PV+A + + T T IKQ R I++ I P+T
Sbjct: 166 STHVNLVPVIAKADTFTTPELTQIKQKIRRILEAQSIDVFHPST 209
>SPAC1610.03c |crp79|meu5|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 710
Score = 23.4 bits (48), Expect = 4.1
Identities = 16/65 (24%), Positives = 31/65 (47%), Gaps = 2/65 (3%)
Frame = +1
Query: 22 KVVGRDFKMNKHLIIFLAVCFISVHAF--VKRDAEAASTGNAFSEIEKQFVEIKKQVQEN 195
K + FK K+ + + V F++ + V +DA+ + G I+ + V K +
Sbjct: 57 KEKAKPFKPPKNGVQYGFVKFVNAESIEEVLKDAKGMTLGQRKLTIKARVVNPAKLTDKK 116
Query: 196 FKPDN 210
FKP++
Sbjct: 117 FKPND 121
>SPAC1006.02 |||WD repeat protein, human GNB1L
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 368
Score = 23.4 bits (48), Expect = 4.1
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3
Query: 15 HKKSCGKRLQ 44
HK+ CGKRLQ
Sbjct: 169 HKEDCGKRLQ 178
>SPAC1556.04c |cdd1|pcd1|cytidine deaminase Ccd1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 133
Score = 23.4 bits (48), Expect = 4.1
Identities = 9/19 (47%), Positives = 14/19 (73%)
Frame = +1
Query: 148 EIEKQFVEIKKQVQENFKP 204
+IEK F E+KK +Q ++ P
Sbjct: 5 DIEKLFQEVKKSLQYSYCP 23
>SPBP8B7.27 |mug30||ubiquitin-protein ligase E3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 807
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/38 (26%), Positives = 19/38 (50%)
Frame = -2
Query: 117 GVAFHKSVNADKADGQEYNQMFVHFEVSSHNFSYEQPS 4
G+A H S+N D + + + + +S ++ QPS
Sbjct: 528 GIAIHNSINLDVQMPRAFYKKLLQLPLSFNDLDDFQPS 565
>SPAC458.02c |||mRNP complex |Schizosaccharomyces pombe|chr
1|||Manual
Length = 468
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +1
Query: 112 DAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNVK 216
D+E+ + F EI + E++KQ Q+ + D K
Sbjct: 173 DSESKKLSDKFVEIRSELDEVRKQ-QDGYYKDQRK 206
>SPBC14C8.14c |pol5||DNA polymerase phi|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 959
Score = 23.0 bits (47), Expect = 5.4
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = +1
Query: 76 VCFISVHAFVKRDAEAASTGNAFSEIEK 159
VCF ++ V++ E + + NAF + K
Sbjct: 148 VCFYVIYKLVEQIPEISFSSNAFLAVNK 175
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 23.0 bits (47), Expect = 5.4
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 133 GNAFSEIEKQFVEIKKQVQENFKPDNVKKQF 225
G E E KK+ + PD+VKK F
Sbjct: 463 GQELDSKEALVTEFKKRTESLSMPDHVKKVF 493
>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 906
Score = 23.0 bits (47), Expect = 5.4
Identities = 10/26 (38%), Positives = 17/26 (65%)
Frame = -3
Query: 176 LISTNCFSISLNALPVLAASASRFTK 99
L++T+ FSI+ + P++A S S K
Sbjct: 112 LVTTHKFSINESPYPIIAVSQSPIDK 137
>SPBC887.09c |||leucine-rich repeat protein Sog2
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 886
Score = 22.6 bits (46), Expect = 7.2
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +2
Query: 77 SALSAFTLL*NATPKQQAP 133
SA+S TLL +A PK P
Sbjct: 691 SAMSVLTLLIDAVPKNNQP 709
>SPBC1198.04c |zas1||zinc finger protein Zas1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 897
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/16 (56%), Positives = 11/16 (68%)
Frame = +1
Query: 118 EAASTGNAFSEIEKQF 165
+AAST NAF + QF
Sbjct: 253 QAASTANAFQQPSNQF 268
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 22.2 bits (45), Expect = 9.5
Identities = 12/22 (54%), Positives = 13/22 (59%)
Frame = +2
Query: 77 SALSAFTLL*NATPKQQAPATR 142
S+ SAFTL TP QAP R
Sbjct: 251 SSNSAFTLPNAVTPAAQAPLIR 272
>SPAC25B8.03 |||phosphatidylserine decarboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 516
Score = 22.2 bits (45), Expect = 9.5
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 18 KKSCGKRLQNEQTFD 62
+ SCGKRL FD
Sbjct: 284 RSSCGKRLSPSSNFD 298
>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1647
Score = 22.2 bits (45), Expect = 9.5
Identities = 9/56 (16%), Positives = 27/56 (48%)
Frame = +1
Query: 49 NKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDNVK 216
+K + FLA+ + ++ K ++ G +++ +QF+++ + D ++
Sbjct: 41 SKDFLKFLALDPANANSRKKLESGEVELGGVINKVNEQFIQLSLTLSTQLNLDEIQ 96
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 756,289
Number of Sequences: 5004
Number of extensions: 10921
Number of successful extensions: 56
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 55
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 54
effective length of database: 2,092,262
effective search space used: 41845240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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