Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K02
         (226 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0204 + 1611837-1611840,1611926-1612048,1614570-1614659,161...    27   1.5  
01_07_0131 + 41292800-41293400,41293522-41293649,41293759-412940...    26   3.6  
08_02_1132 - 24530921-24532906                                         25   6.2  
01_06_0203 - 27487469-27489787                                         25   8.2  

>03_01_0204 +
           1611837-1611840,1611926-1612048,1614570-1614659,
           1615529-1616095,1616235-1616959,1617065-1617252,
           1617331-1617778
          Length = 714

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 16/61 (26%), Positives = 29/61 (47%)
 Frame = +1

Query: 1   ARGLLIRKVVGRDFKMNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIKK 180
           AR    + VV  D     +L+  +   F S+H  +    E  S+GN  ++IE+   +++ 
Sbjct: 315 ARPFKGKNVVESDHSPIPNLLDPIVTLFDSIHGNILNTPEFTSSGNMSNDIEQPKTDLES 374

Query: 181 Q 183
           Q
Sbjct: 375 Q 375


>01_07_0131 +
           41292800-41293400,41293522-41293649,41293759-41294019,
           41294154-41294416,41294507-41294831
          Length = 525

 Score = 26.2 bits (55), Expect = 3.6
 Identities = 13/37 (35%), Positives = 20/37 (54%)
 Frame = +3

Query: 33  KRLQNEQTFDYIPGRLLYQRSRFCETRRRSSKHRQRV 143
           K + +E+TFDYI G ++  R+      R S K +  V
Sbjct: 263 KLIASEKTFDYIEGFVIINRTGILNNWRTSFKPQDPV 299


>08_02_1132 - 24530921-24532906
          Length = 661

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = +1

Query: 76  VCFISVHAFVKRDAEAASTGNAFSEIE 156
           V F  V   VKRDAEA S  N +  IE
Sbjct: 216 VGFEVVPCSVKRDAEAFSKSNMYDSIE 242


>01_06_0203 - 27487469-27489787
          Length = 772

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 218 FLTLSGLKFSCTCFLISTNCFSISL 144
           FLT     FSC  + I TN F+ S+
Sbjct: 44  FLTSPNSTFSCGFYPIGTNAFTFSI 68


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,658,870
Number of Sequences: 37544
Number of extensions: 62487
Number of successful extensions: 202
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 202
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 202
length of database: 14,793,348
effective HSP length: 54
effective length of database: 12,765,972
effective search space used: 255319440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)