Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_K02
(226 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006742-5|AAF60496.1| 239|Caenorhabditis elegans Hypothetical ... 32 0.063
AC006742-4|AAF60495.1| 239|Caenorhabditis elegans Hypothetical ... 32 0.063
U55365-8|AAA98573.2| 383|Caenorhabditis elegans Hypothetical pr... 25 5.5
U28732-1|AAB04901.2| 540|Caenorhabditis elegans Hypothetical pr... 25 5.5
AF078786-3|AAC26943.2| 384|Caenorhabditis elegans Hypothetical ... 25 5.5
Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical pr... 25 7.2
Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical pr... 25 7.2
U97009-10|AAC69033.1| 533|Caenorhabditis elegans Udp-glucuronos... 25 7.2
AF087133-1|AAD14595.1| 728|Caenorhabditis elegans alternatively... 25 7.2
AF087132-1|AAD14594.1| 792|Caenorhabditis elegans alternatively... 25 7.2
AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively... 25 7.2
AC024804-5|AAF60747.2| 143|Caenorhabditis elegans Hypothetical ... 25 7.2
Z82282-10|CAB05277.2| 600|Caenorhabditis elegans Hypothetical p... 25 9.6
Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical pr... 25 9.6
U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical pr... 25 9.6
AY661556-1|AAV70493.1| 714|Caenorhabditis elegans acetylcholine... 25 9.6
AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin for... 25 9.6
AF078786-4|AAC26944.4| 714|Caenorhabditis elegans Sodium:neurot... 25 9.6
AF068713-10|AAC17801.1| 376|Caenorhabditis elegans Serpentine r... 25 9.6
AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protei... 25 9.6
>AC006742-5|AAF60496.1| 239|Caenorhabditis elegans Hypothetical
protein Y38C1AB.7 protein.
Length = 239
Score = 31.9 bits (69), Expect = 0.063
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 7 GLLIRKVVGRDFKMNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIK--K 180
G + KV + + K ++ A CF+++H D AAS ++ ++ K K
Sbjct: 39 GQQLEKVSLPNNSLEKLMVKHFANCFVALHTMNSLDELAASAPKFVADFKQAIGNKKTLK 98
Query: 181 QVQENFKPDNVKKQ 222
++ +NFK + K+Q
Sbjct: 99 ELHDNFKSSDTKQQ 112
>AC006742-4|AAF60495.1| 239|Caenorhabditis elegans Hypothetical
protein Y38C1AB.3 protein.
Length = 239
Score = 31.9 bits (69), Expect = 0.063
Identities = 19/74 (25%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
Frame = +1
Query: 7 GLLIRKVVGRDFKMNKHLIIFLAVCFISVHAFVKRDAEAASTGNAFSEIEKQFVEIK--K 180
G + KV + + K ++ A CF+++H D AAS ++ ++ K K
Sbjct: 39 GQQLEKVSLPNNSLEKLMVKHFANCFVALHTMNSLDELAASAPKFVADFKQAIGNKKTLK 98
Query: 181 QVQENFKPDNVKKQ 222
++ +NFK + K+Q
Sbjct: 99 ELHDNFKSSDTKQQ 112
>U55365-8|AAA98573.2| 383|Caenorhabditis elegans Hypothetical
protein C12D5.2 protein.
Length = 383
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/34 (35%), Positives = 18/34 (52%)
Frame = -3
Query: 200 LKFSCTCFLISTNCFSISLNALPVLAASASRFTK 99
LK C+ I+++CF + P+L A RF K
Sbjct: 51 LKSELRCY-INSDCFDLDKRTEPLLRCRACRFKK 83
>U28732-1|AAB04901.2| 540|Caenorhabditis elegans Hypothetical
protein F45E1.5 protein.
Length = 540
Score = 25.4 bits (53), Expect = 5.5
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = +1
Query: 148 EIEKQFVEIKKQVQENFKPDNVKKQ 222
E +K+ E+K+Q E K NVKKQ
Sbjct: 496 EEQKEQKELKRQQCEELKRQNVKKQ 520
>AF078786-3|AAC26943.2| 384|Caenorhabditis elegans Hypothetical
protein M01G5.3 protein.
Length = 384
Score = 25.4 bits (53), Expect = 5.5
Identities = 16/45 (35%), Positives = 22/45 (48%)
Frame = +3
Query: 87 QRSRFCETRRRSSKHRQRV*RN*KAICRN*KTSAGKLQTRQC*KT 221
Q S+F ET ++ KH + +N K R + SA KL KT
Sbjct: 33 QVSKFQETAGKAMKHHNYLLKNLKETMRQAQQSAEKLDEADTSKT 77
>Z50029-6|CAD57714.1| 1072|Caenorhabditis elegans Hypothetical
protein ZC504.4d protein.
Length = 1072
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 69 PGRLLYQRSRFCETRRRSSKHRQR 140
P YQ+SR+ E RR SS+ + R
Sbjct: 371 PAPFQYQQSRYVEPRRESSEVKLR 394
>Z50029-5|CAC42384.1| 1096|Caenorhabditis elegans Hypothetical
protein ZC504.4c protein.
Length = 1096
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 69 PGRLLYQRSRFCETRRRSSKHRQR 140
P YQ+SR+ E RR SS+ + R
Sbjct: 386 PAPFQYQQSRYVEPRRESSEVKLR 409
>Z50029-4|CAB63417.1| 1082|Caenorhabditis elegans Hypothetical
protein ZC504.4b protein.
Length = 1082
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 69 PGRLLYQRSRFCETRRRSSKHRQR 140
P YQ+SR+ E RR SS+ + R
Sbjct: 386 PAPFQYQQSRYVEPRRESSEVKLR 409
>Z50029-3|CAB63416.1| 1087|Caenorhabditis elegans Hypothetical
protein ZC504.4a protein.
Length = 1087
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 69 PGRLLYQRSRFCETRRRSSKHRQR 140
P YQ+SR+ E RR SS+ + R
Sbjct: 386 PAPFQYQQSRYVEPRRESSEVKLR 409
>U97009-10|AAC69033.1| 533|Caenorhabditis elegans
Udp-glucuronosyltransferase protein11 protein.
Length = 533
Score = 25.0 bits (52), Expect = 7.2
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 200 LKFSCTCFLISTNCFSISLNALPVLAASASRF 105
L FSC CFL+ N + L P+ S +F
Sbjct: 4 LTFSCLCFLLKVNYAAKILIFNPIFGFSHVKF 35
>AF087133-1|AAD14595.1| 728|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 728
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 69 PGRLLYQRSRFCETRRRSSKHRQR 140
P YQ+SR+ E RR SS+ + R
Sbjct: 18 PAPFQYQQSRYVEPRRESSEVKLR 41
>AF087132-1|AAD14594.1| 792|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 792
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 69 PGRLLYQRSRFCETRRRSSKHRQR 140
P YQ+SR+ E RR SS+ + R
Sbjct: 91 PAPFQYQQSRYVEPRRESSEVKLR 114
>AF087131-1|AAD14593.1| 1087|Caenorhabditis elegans alternatively
spliced serine/threonineprotein kinase MIG-15 protein.
Length = 1087
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 69 PGRLLYQRSRFCETRRRSSKHRQR 140
P YQ+SR+ E RR SS+ + R
Sbjct: 386 PAPFQYQQSRYVEPRRESSEVKLR 409
>AC024804-5|AAF60747.2| 143|Caenorhabditis elegans Hypothetical
protein Y51H7BR.4 protein.
Length = 143
Score = 25.0 bits (52), Expect = 7.2
Identities = 11/27 (40%), Positives = 14/27 (51%)
Frame = -3
Query: 209 LSGLKFSCTCFLISTNCFSISLNALPV 129
L L FSC CF+ S S N++ V
Sbjct: 13 LMQLVFSCACFIASLAIISAKFNSVSV 39
>Z82282-10|CAB05277.2| 600|Caenorhabditis elegans Hypothetical
protein T07G12.6 protein.
Length = 600
Score = 24.6 bits (51), Expect = 9.6
Identities = 9/16 (56%), Positives = 10/16 (62%)
Frame = -2
Query: 48 HFEVSSHNFSYEQPSC 1
H + S FSYEQP C
Sbjct: 307 HNAIQSDGFSYEQPIC 322
>Z77662-5|CAB01192.2| 579|Caenorhabditis elegans Hypothetical
protein F47B8.5 protein.
Length = 579
Score = 24.6 bits (51), Expect = 9.6
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = +1
Query: 22 KVVGRDFKMNKHLIIFLAVCFISVHAF 102
++V K+ K IIF A+C S+ +F
Sbjct: 295 RIVFAKIKLTKPAIIFEAICLFSLFSF 321
>U97196-1|AAK68667.2| 3279|Caenorhabditis elegans Hypothetical
protein B0207.5 protein.
Length = 3279
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +1
Query: 103 VKRDAEAASTGNAFSEIEKQFVEIKKQVQENFKPDN 210
V+R+ S GN E ++ + KK+ + NF+ D+
Sbjct: 454 VRREFNCDSVGNVDQLSEDEYNDYKKRCKVNFEGDD 489
>AY661556-1|AAV70493.1| 714|Caenorhabditis elegans
acetylcholine/choline transporter protein.
Length = 714
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 221 CFLTLSGLKFSCTCFLISTNCFSI 150
C LT S + F+C F IS + F I
Sbjct: 383 CLLTFSAIGFTCYEFAISLDKFHI 406
>AF148954-1|AAD37411.1| 4280|Caenorhabditis elegans myotactin form A
protein.
Length = 4280
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 78 LLYQRSRFCETRRRSSKHRQRV*RN 152
L++ S+FC+ R RSSK R+ N
Sbjct: 3927 LIWCISKFCKDRYRSSKEHSRLVTN 3951
>AF078786-4|AAC26944.4| 714|Caenorhabditis elegans
Sodium:neurotransmitter symporterfamily protein 6
protein.
Length = 714
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 221 CFLTLSGLKFSCTCFLISTNCFSI 150
C LT S + F+C F IS + F I
Sbjct: 383 CLLTFSAIGFTCYEFAISLDKFHI 406
>AF068713-10|AAC17801.1| 376|Caenorhabditis elegans Serpentine
receptor, class w protein130 protein.
Length = 376
Score = 24.6 bits (51), Expect = 9.6
Identities = 8/24 (33%), Positives = 13/24 (54%)
Frame = +1
Query: 40 FKMNKHLIIFLAVCFISVHAFVKR 111
F N H + + +CFI + F +R
Sbjct: 105 FNSNSHASVLIDLCFIKLRDFARR 128
>AF040648-4|AAK21414.2| 4280|Caenorhabditis elegans Lethal protein
805, isoform a protein.
Length = 4280
Score = 24.6 bits (51), Expect = 9.6
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +3
Query: 78 LLYQRSRFCETRRRSSKHRQRV*RN 152
L++ S+FC+ R RSSK R+ N
Sbjct: 3927 LIWCISKFCKDRYRSSKEHSRLVTN 3951
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,238,147
Number of Sequences: 27780
Number of extensions: 61626
Number of successful extensions: 262
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 261
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 262
length of database: 12,740,198
effective HSP length: 54
effective length of database: 11,240,078
effective search space used: 224801560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -