Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K01
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21 |Schizosac...    26   3.5  
SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces ...    26   3.5  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   6.2  
SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Ma...    25   8.2  

>SPAC4A8.09c |cwf21||complexed with Cdc5 protein Cwf21
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 293

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 263 QEQTKPPNYTQGGEDPVYDEDSLP 334
           +E++  P+YT+    PV D DS P
Sbjct: 264 RERSNSPSYTKNESIPVVDRDSSP 287


>SPCC31H12.02c |mug73||membrane transporter |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 306

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 377 NIWRTVYRFRRVSMGGFSWISYFFWIYNIPL 469
           N++ +   FR VS+    ++ Y  W+ N PL
Sbjct: 82  NVFSSASFFREVSVRMVYYVRYIQWLINFPL 112


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 8/25 (32%), Positives = 16/25 (64%)
 Frame = -2

Query: 244 VYFVEKAMARSTLWACNLQNHIATA 170
           + F+E+ + R T W+C L +  A++
Sbjct: 549 ISFLERELRRRTFWSCFLMDRYASS 573


>SPAC9.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 16/48 (33%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
 Frame = -2

Query: 481 SSPPQWYVIDPEEVRYPA--KTTHGNSPKSVNCPPYILFPSGVNSTLT 344
           +SP   Y+  P  +R+P     T   +P   + P YI  PS  NS  T
Sbjct: 169 TSPNSGYITSP--LRHPILLSETEPGTPTKNDSPAYIGLPSQPNSITT 214


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,130,617
Number of Sequences: 5004
Number of extensions: 41529
Number of successful extensions: 120
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)