Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K01
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0797 - 11296426-11297258,11297745-11297901                       31   0.50 
08_01_0992 + 10045182-10045917,10046225-10046685                       29   1.5  
01_06_1034 + 33962813-33963802                                         29   2.0  
08_02_1110 + 24371934-24374763,24375034-24375518                       28   3.5  
01_01_1080 + 8495480-8495851                                           27   6.2  

>03_02_0797 - 11296426-11297258,11297745-11297901
          Length = 329

 Score = 31.1 bits (67), Expect = 0.50
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +2

Query: 272 TKPPNYTQGGEDPVYDEDSLPAPSSQC 352
           T P ++  GG D +Y+   LPAP + C
Sbjct: 169 TPPLSWQHGGSDGLYESPELPAPDASC 195


>08_01_0992 + 10045182-10045917,10046225-10046685
          Length = 398

 Score = 29.5 bits (63), Expect = 1.5
 Identities = 17/46 (36%), Positives = 22/46 (47%)
 Frame = -2

Query: 484 TSSPPQWYVIDPEEVRYPAKTTHGNSPKSVNCPPYILFPSGVNSTL 347
           TSS   +   DPE VR+   + HGN PK           +GV+ TL
Sbjct: 65  TSSIRFFITCDPENVRHIFTSNHGNYPKGHEFAEIFDIMAGVSFTL 110


>01_06_1034 + 33962813-33963802
          Length = 329

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/22 (68%), Positives = 16/22 (72%), Gaps = 2/22 (9%)
 Frame = -1

Query: 347 DSMELVK-NLRHTRDLPH-PAC 288
           DSM +VK NLRH RD PH P C
Sbjct: 174 DSMPVVKINLRHLRDDPHCPVC 195


>08_02_1110 + 24371934-24374763,24375034-24375518
          Length = 1104

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 14/51 (27%), Positives = 27/51 (52%)
 Frame = +3

Query: 258 ISKNKLNHLITRRVGKIPCMTKILYQLHRVSVELTPDGNRIYGGQFTDLGE 410
           +S N+L  ++   +G +P +TK+    +R+S  + P+       Q  DLG+
Sbjct: 541 VSDNRLTGVLGAGIGSLPELTKLNLGKNRISGGIPPELGSCEKLQLLDLGD 591


>01_01_1080 + 8495480-8495851
          Length = 123

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 5/52 (9%)
 Frame = -2

Query: 481 SSPPQWYVI-DPEEVRYPAKTTHGNSPKSVNCP-PYIL---FPSGVNSTLTR 341
           S PP   ++ DP    +P  T   N PK ++CP PY+    +P  +   L+R
Sbjct: 32  SIPPFGLLLFDPTIFNFPNMTIIFNLPKIISCPCPYVCRSKYPHQIQPNLSR 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,432,310
Number of Sequences: 37544
Number of extensions: 293249
Number of successful extensions: 732
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 724
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 732
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)