Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_K01
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045646-4|AAK29837.2|  295|Caenorhabditis elegans Hypothetical ...    30   0.79 
AF045646-3|AAK29836.2|  432|Caenorhabditis elegans Hypothetical ...    30   0.79 
U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide tr...    28   3.2  
AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity ...    28   3.2  
Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z73424-1|CAA97779.1|  386|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>AF045646-4|AAK29837.2|  295|Caenorhabditis elegans Hypothetical
          protein F56B3.2b protein.
          Length = 295

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 5  SFVFGIPSNMESCPYRDLCDTTG 73
          S  F IPSN ++CP   +C T G
Sbjct: 28 SLAFNIPSNQDNCPMGQVCITAG 50


>AF045646-3|AAK29836.2|  432|Caenorhabditis elegans Hypothetical
           protein F56B3.2a protein.
          Length = 432

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +2

Query: 5   SFVFGIPSNMESCPYRDLCDTTG 73
           S  F IPSN ++CP   +C T G
Sbjct: 180 SLAFNIPSNQDNCPMGQVCITAG 202


>U39666-2|AAA80411.2|  835|Caenorhabditis elegans Oligopeptide
           transporter protein 2 protein.
          Length = 835

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 377 SISVWCQFHTDSMELVKNLRHTRDLPH 297
           SIS W QF TD    V +  H R LPH
Sbjct: 435 SISFWNQFETDCTITVMSGIHKRVLPH 461


>AF000418-1|AAC39119.1|  796|Caenorhabditis elegans low-affinity
           peptide transporter protein.
          Length = 796

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/27 (51%), Positives = 15/27 (55%)
 Frame = -1

Query: 377 SISVWCQFHTDSMELVKNLRHTRDLPH 297
           SIS W QF TD    V +  H R LPH
Sbjct: 396 SISFWNQFETDCTITVMSGIHKRVLPH 422


>Z49888-2|CAA90061.1| 1071|Caenorhabditis elegans Hypothetical protein
            F47A4.5 protein.
          Length = 1071

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/25 (48%), Positives = 17/25 (68%), Gaps = 1/25 (4%)
 Frame = -1

Query: 368  VWCQFHTDSM-ELVKNLRHTRDLPH 297
            ++C+ H D + ELVK L+H  D PH
Sbjct: 1039 IYCRKHRDYIDELVKVLKHDTDHPH 1063


>Z73424-1|CAA97779.1|  386|Caenorhabditis elegans Hypothetical
           protein C44B9.2 protein.
          Length = 386

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 345 VSVELTPDGNRIYGGQFTDLGEFPWVVLAGYRTSSGS 455
           +SVEL P   R+    F DL     +  +G++ SSGS
Sbjct: 41  MSVELPPGLPRVNNSVFDDLSPPAHIPFSGWKQSSGS 77


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,915,239
Number of Sequences: 27780
Number of extensions: 239350
Number of successful extensions: 741
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)