Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J24
         (597 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyc...    30   0.22 
SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein 3...    26   4.8  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    26   4.8  
SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyce...    25   8.4  
SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog Mde5|S...    25   8.4  

>SPBC12C2.12c |glo1|SPBC21D10.03c|glyoxalase I |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 302

 Score = 30.3 bits (65), Expect = 0.22
 Identities = 20/69 (28%), Positives = 32/69 (46%)
 Frame = +2

Query: 146 HFVFKVADRTLTAKFYRDVLGMKVLRHEEFTEGCEATCNGPYANRWSKTMVGYGPEDSHF 325
           H + +V D   + KFY +V GMK++    F E  E + +    +       G        
Sbjct: 14  HTMIRVKDLDKSLKFYTEVFGMKLIDQWVFEEN-EFSLSFLAFDGPGALNHGVERSKREG 72

Query: 326 VVELTYNYG 352
           ++ELTYN+G
Sbjct: 73  ILELTYNFG 81


>SPAC11G7.06c |mug132||S. pombe specific UPF0300 family protein
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 430

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -3

Query: 448 LNWPVVCSSSFQALTRL 398
           L W ++CS  FQAL  L
Sbjct: 244 LKWLIICSKQFQALVHL 260


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 304 ITNHGLAPSVCIRSITSCLTTFSKFFMTKN 215
           +   GL   +C R +T   + +S  F++KN
Sbjct: 511 VVGAGLTGLICARQLTGLFSQYSSSFLSKN 540


>SPAC1002.05c |jmj2||histone demethylase Jmj2 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 715

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +2

Query: 320 HFVVELTYNYGVTHYDQGNDFLGLTLQSSESLKRAAANNWP--VKEQNGLKY 469
           H     TY+    HY     + G+    +E  +RAA +  P  VK+Q  L Y
Sbjct: 468 HVEDNYTYSVNYQHYGDTKLWYGIPGDQAERFERAALDIAPDLVKKQKDLLY 519


>SPAC25H1.09 |mde5|meu30, SPAC4A8.01|alpha-amylase homolog
           Mde5|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 8.4
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +2

Query: 353 VTHYDQGNDFLGLTLQSSESLKRAAANN 436
           V H+ + +  LGL L+S ++ + AA NN
Sbjct: 300 VAHHCKDSTLLGLFLESQDAPRLAALNN 327


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,608,047
Number of Sequences: 5004
Number of extensions: 55998
Number of successful extensions: 110
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 107
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 110
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 260219058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)