Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J24
         (597 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   2.3  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   2.3  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   2.3  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              23   2.3  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   6.9  

>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -3

Query: 379 IIPLVIMCYTIVVCELYNEMRIFWTITNHGLAPSVC-IRSITSCLTTF 239
           +  L I    ++V  L NE+ +FW      L  S+C IR+  S ++++
Sbjct: 79  LFSLAISDLILLVLGLPNELSLFWQQYPWVLGVSLCKIRAYVSEMSSY 126


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 12/33 (36%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
 Frame = +2

Query: 290 TMVGYGPEDSHFVVELTYNYGVTHY-DQGNDFL 385
           T+V  GPE +      TY Y  + Y  QG+  L
Sbjct: 242 TIVNNGPEAAKMAKAFTYTYNYSMYWGQGHAIL 274


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 447 LTGQLFAAALFKLSLDCSVRPRKSF 373
           L G +   ++FK  +   +RPR SF
Sbjct: 194 LVGMVMYISVFKAEVGSKLRPRSSF 218


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 23.0 bits (47), Expect = 2.3
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -2

Query: 584 MQLILPSSNLLMILSRQDLYQQAVVVKLYRTCNRQAP 474
           ++ +LP+ NL+    R + Y+Q V  ++Y +C  ++P
Sbjct: 51  LRQVLPNGNLVFPPFRAEDYRQEVHAQVY-SCLARSP 86


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 6.9
 Identities = 7/20 (35%), Positives = 13/20 (65%)
 Frame = -1

Query: 93  ISDL*MPCL*IQFFKYNLYK 34
           +S   +PC+ + F  YN++K
Sbjct: 349 LSSFYIPCIIMVFLYYNIFK 368


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,836
Number of Sequences: 438
Number of extensions: 4334
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17482179
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)