Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J23
         (518 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC211.07c |ubc8||ubiquitin conjugating enzyme Ubc8|Schizosacch...    31   0.14 
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c...    26   3.9  
SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr ...    26   3.9  
SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   3.9  
SPBC119.02 |ubc4||ubiquitin conjugating enzyme Ubc4|Schizosaccha...    25   5.1  
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc...    25   5.1  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    25   9.0  
SPAC959.03c |||U3 snoRNP-associated protein Utp7|Schizosaccharom...    25   9.0  

>SPBC211.07c |ubc8||ubiquitin conjugating enzyme
           Ubc8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 184

 Score = 30.7 bits (66), Expect = 0.14
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 426 DDLLDLYV-FMFPAETPYAGGTFRVRLVLGRE 518
           D++ + YV F  P+ETPY+GG ++V + L  E
Sbjct: 27  DNMQEFYVRFHGPSETPYSGGIWKVHVELPSE 58


>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 807

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -3

Query: 147 TFLFSNNKYKKGIQDLCPCYVQECVCSVVHVMLDAW-SVSLY 25
           TFL+ + K+ K  Q L     + C     H++  +W  +S+Y
Sbjct: 87  TFLYHSEKWDKAFQVLSGPAYEVCWSQQGHILATSWKQISIY 128


>SPAC644.16 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 422

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = -2

Query: 511 PSTSRTRNVPPAYGVSAGNMKTYKSKRSSQIRRSERLRKPT 389
           P+TS     PPAYG+ A         RSS I  S  +R P+
Sbjct: 312 PTTSAYNPAPPAYGM-ANPAYGSTGIRSSSIPSSGSIRSPS 351


>SPCC962.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 536

 Score = 25.8 bits (54), Expect = 3.9
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = -3

Query: 129 NKYKKGIQDLCPCYVQECVCSVVHVML 49
           N+Y++ I DL   Y+  CV    HV++
Sbjct: 110 NRYQQKINDLRSAYINLCVPIAQHVLM 136


>SPBC119.02 |ubc4||ubiquitin conjugating enzyme
           Ubc4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 147

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 12/23 (52%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = +3

Query: 426 DDLLDLYV-FMFPAETPYAGGTF 491
           DDL       M PA++PYAGG F
Sbjct: 28  DDLFHWQATIMGPADSPYAGGVF 50


>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
           reductase AKR3C2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 284

 Score = 25.4 bits (53), Expect = 5.1
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +3

Query: 399 LNRSLRRICDDLLDLYVFMFP 461
           LN SLR++  D LDLY+   P
Sbjct: 91  LNESLRKLGTDYLDLYLLHSP 111


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/24 (33%), Positives = 16/24 (66%)
 Frame = +3

Query: 417 RICDDLLDLYVFMFPAETPYAGGT 488
           ++CD ++D + F  P + P+A G+
Sbjct: 107 KLCDVVMDPHSFEVPIKCPWAAGS 130


>SPAC959.03c |||U3 snoRNP-associated protein
           Utp7|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 520

 Score = 24.6 bits (51), Expect = 9.0
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = -2

Query: 457 NMKTYKSKRSSQIRRSERLRKPTEKW 380
           +++  K  R+ ++RR ++L +  EKW
Sbjct: 484 SLEIEKKMRAQRVRREQKLPEEREKW 509


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,122,374
Number of Sequences: 5004
Number of extensions: 40604
Number of successful extensions: 98
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 98
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 210309424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)