Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J23
         (518 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1005 + 26837047-26837093,26837644-26837731,26837854-268379...    29   1.7  
02_05_0558 - 29950120-29950319,29951213-29951579,29952067-29952372     28   5.2  
01_07_0352 - 42958903-42959010,42959928-42960142,42960651-429607...    28   5.2  
01_06_0222 - 27662122-27662159,27662251-27662341,27662760-276628...    27   6.8  

>06_03_1005 +
           26837047-26837093,26837644-26837731,26837854-26837998,
           26838150-26838227,26838323-26838435,26838538-26838641,
           26838804-26839119
          Length = 296

 Score = 29.5 bits (63), Expect = 1.7
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +3

Query: 459 PAETPYAGGTFRVRLVLGRE 518
           PA TPY  G FR++L+L R+
Sbjct: 93  PAGTPYENGVFRMKLLLSRD 112


>02_05_0558 - 29950120-29950319,29951213-29951579,29952067-29952372
          Length = 290

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 12/17 (70%), Positives = 13/17 (76%)
 Frame = +3

Query: 459 PAETPYAGGTFRVRLVL 509
           PA TPYAGGTF V + L
Sbjct: 69  PAGTPYAGGTFPVDIQL 85


>01_07_0352 -
           42958903-42959010,42959928-42960142,42960651-42960773,
           42960884-42960973,42961057-42961164,42961623-42961808,
           42961858-42961923,42962312-42962495
          Length = 359

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 15/49 (30%), Positives = 24/49 (48%)
 Frame = -2

Query: 508 STSRTRNVPPAYGVSAGNMKTYKSKRSSQIRRSERLRKPTEKW*RKSRL 362
           S+S T + PPA  +  G   T  + +S    R++    PT++  R S L
Sbjct: 265 SSSITDSSPPALSIDTGRESTTTTSQSHSRSRAKNQDNPTKRGARPSNL 313


>01_06_0222 -
           27662122-27662159,27662251-27662341,27662760-27662801,
           27663591-27663649,27664300-27664386,27664501-27664528,
           27664683-27664718
          Length = 126

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +3

Query: 459 PAETPYAGGTFRVRLVLGRE 518
           PA++PY GG F++ L L  E
Sbjct: 44  PAQSPYEGGVFKLELFLPEE 63


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,064,288
Number of Sequences: 37544
Number of extensions: 260514
Number of successful extensions: 561
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 552
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)