Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J23
         (518 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z71266-5|CAD56593.1|  370|Caenorhabditis elegans Hypothetical pr...    31   0.49 
Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical pr...    31   0.49 
U80437-18|AAB37629.1|  518|Caenorhabditis elegans Cell division ...    29   2.0  
Z75531-5|CAA99800.1|  384|Caenorhabditis elegans Hypothetical pr...    28   3.5  
U39674-5|AAA80415.2|  229|Caenorhabditis elegans Ubiquitin conju...    28   3.5  
U11245-1|AAA96833.1|  198|Caenorhabditis elegans cysteine protea...    28   4.6  
AF025461-7|AAB70997.2|  330|Caenorhabditis elegans Seven tm rece...    27   6.1  

>Z71266-5|CAD56593.1|  370|Caenorhabditis elegans Hypothetical
           protein R06C7.5b protein.
          Length = 370

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 339 LTGYTYTSSRDLRYHFSVGFLNRSLRRICDDLLDLYVF 452
           +TG TY+  +D +  FS+  L  + +++C D+  L  F
Sbjct: 234 ITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAF 271


>Z71266-4|CAA95843.1|  478|Caenorhabditis elegans Hypothetical
           protein R06C7.5a protein.
          Length = 478

 Score = 31.1 bits (67), Expect = 0.49
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = +3

Query: 339 LTGYTYTSSRDLRYHFSVGFLNRSLRRICDDLLDLYVF 452
           +TG TY+  +D +  FS+  L  + +++C D+  L  F
Sbjct: 234 ITGQTYSRQQDSQLVFSLSLLGAAAKKVCTDIRVLQAF 271


>U80437-18|AAB37629.1|  518|Caenorhabditis elegans Cell division
           cycle related protein6 protein.
          Length = 518

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 15/48 (31%), Positives = 24/48 (50%)
 Frame = -2

Query: 469 VSAGNMKTYKSKRSSQIRRSERLRKPTEKW*RKSRLEVYVYPVKKSST 326
           +S+ +  T KS+R+     SE   KP+    + SRL     P++K  T
Sbjct: 1   MSSKSGSTRKSQRARDFEESEETEKPSLTRRKSSRLSTQSVPIEKKKT 48


>Z75531-5|CAA99800.1|  384|Caenorhabditis elegans Hypothetical
           protein C54D10.5 protein.
          Length = 384

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = -2

Query: 415 RSERLRKPTEKW*RKSRLEVYVYPVKKSSTIP*VTLP*VK 296
           + E+L +PTE   ++ RL   + PV KSST   ++ P +K
Sbjct: 245 QKEKLPEPTEVCFKEDRLLTQITPVHKSSTTIGLSFPPLK 284


>U39674-5|AAA80415.2|  229|Caenorhabditis elegans Ubiquitin
           conjugating enzyme protein21 protein.
          Length = 229

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 12/27 (44%), Positives = 20/27 (74%), Gaps = 1/27 (3%)
 Frame = +3

Query: 426 DDLLDLYVFMF-PAETPYAGGTFRVRL 503
           ++L+D+  F+  P  TPYAGGTF +++
Sbjct: 48  NNLMDIKGFIKGPEGTPYAGGTFEIKV 74


>U11245-1|AAA96833.1|  198|Caenorhabditis elegans cysteine protease
           protein.
          Length = 198

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 12  ARGRDTVTLTMHQALHVQHCIHTPAHNTDIG 104
           A G+  + LT H+ LH +  +HTPA     G
Sbjct: 106 ALGKLDIALTYHKDLHFRTILHTPASKEAAG 136


>AF025461-7|AAB70997.2|  330|Caenorhabditis elegans Seven tm
           receptor protein 148 protein.
          Length = 330

 Score = 27.5 bits (58), Expect = 6.1
 Identities = 12/31 (38%), Positives = 21/31 (67%), Gaps = 1/31 (3%)
 Frame = -1

Query: 149 LLFYLVIINIKKVYRTYVRVMCR-SVYAVLY 60
           LL YL+    +K++ TY  VMC  ++Y+++Y
Sbjct: 21  LLVYLIWTKAEKLFGTYRHVMCTFALYSLVY 51


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,026,241
Number of Sequences: 27780
Number of extensions: 235646
Number of successful extensions: 607
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 574
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 607
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)