Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J21
         (397 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|c...    27   1.4  
SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyce...    26   2.4  
SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces po...    25   4.3  
SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|c...    24   7.4  
SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr...    24   9.8  

>SPBC2G5.01 |||DUF1682 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 374

 Score = 26.6 bits (56), Expect = 1.4
 Identities = 9/22 (40%), Positives = 18/22 (81%)
 Frame = -1

Query: 334 WQTNYKL*RIIMFCFFLYIFNY 269
           W+ +++L  +I+ CFFLY+F++
Sbjct: 46  WR-DFRLEFVILACFFLYVFSF 66


>SPAC25B8.16 |||RNase P and RNase MRP subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 698

 Score = 25.8 bits (54), Expect = 2.4
 Identities = 9/30 (30%), Positives = 18/30 (60%)
 Frame = +1

Query: 40  SPFAFGYVYLNRKTKTNDNNEKRVETIKEQ 129
           +PF   +VYLN   K + + +K ++ ++ Q
Sbjct: 562 NPFCCDWVYLNEMVKASRDEDKTLQLVRVQ 591


>SPAC24B11.14 ||SPAC806.10|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 25.0 bits (52), Expect = 4.3
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -1

Query: 220 FRYYYYINIATVSFIHVSLENIQNTN*PH 134
           FRYY YI++  V+   V L  + N+  P+
Sbjct: 88  FRYYNYISLYFVTHSKVPLNRLPNSMIPY 116


>SPAC5D6.10c |mug116||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 135

 Score = 24.2 bits (50), Expect = 7.4
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +1

Query: 76  KTKTNDNNEKRVETIKEQPGAVNSYFVY 159
           KTK     EK+ ETI E+   + S+ +Y
Sbjct: 89  KTKKKRKKEKKKETIVEKNKVLKSFALY 116


>SPAC15A10.15 |sgo2||shugoshin Sgo2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 647

 Score = 23.8 bits (49), Expect = 9.8
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = +1

Query: 67  LNRKTKTNDNNEKRVETIKEQPGAVNS 147
           L+     N+NNE RVE +  +  +++S
Sbjct: 201 LSNSKPVNNNNEDRVEAVTSENKSIDS 227


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,262,245
Number of Sequences: 5004
Number of extensions: 20686
Number of successful extensions: 45
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 132093910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)