Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J20
         (470 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1al...   239   1e-65
X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alp...   236   8e-65
AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor 1-a...   150   8e-39
EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor 1-a...   117   7e-29
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    33   0.002
AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase pro...    22   2.9  
D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.    22   3.8  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   8.8  

>AF015267-1|AAC38959.1|  461|Apis mellifera elongation factor-1alpha
           F2 protein.
          Length = 461

 Score =  239 bits (584), Expect = 1e-65
 Identities = 114/128 (89%), Positives = 114/128 (89%)
 Frame = +1

Query: 85  MGKEXXXXXXXXXXXXDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAHEMGKGSFKYAWVL 264
           MGKE            DSGKSTTTGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 265 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 444
           DKLKAERERGITIDIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT
Sbjct: 61  DKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 120

Query: 445 GEFEAGIS 468
           GEFEAGIS
Sbjct: 121 GEFEAGIS 128


>X52884-1|CAA37066.1|  461|Apis mellifera elongation factor 1 alpha
           protein.
          Length = 461

 Score =  236 bits (578), Expect = 8e-65
 Identities = 113/128 (88%), Positives = 113/128 (88%)
 Frame = +1

Query: 85  MGKEXXXXXXXXXXXXDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAHEMGKGSFKYAWVL 264
           MGKE            DSGKSTTTGHLIYKCGGIDKRTIEKFEKEA EMGKGSFKYAWVL
Sbjct: 1   MGKEKIHINIVVIGHVDSGKSTTTGHLIYKCGGIDKRTIEKFEKEAQEMGKGSFKYAWVL 60

Query: 265 DKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGT 444
           DKLKAERERGITIDIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAG 
Sbjct: 61  DKLKAERERGITIDIALWKFETAKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGI 120

Query: 445 GEFEAGIS 468
           GEFEAGIS
Sbjct: 121 GEFEAGIS 128


>AY208278-1|AAO48970.1|  274|Apis mellifera elongation factor
           1-alpha protein.
          Length = 274

 Score =  150 bits (363), Expect = 8e-39
 Identities = 70/71 (98%), Positives = 70/71 (98%)
 Frame = +1

Query: 256 WVLDKLKAERERGITIDIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 435
           WVLDKLKAERERGITIDIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA
Sbjct: 1   WVLDKLKAERERGITIDIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVA 60

Query: 436 AGTGEFEAGIS 468
           AGTGEFEAGIS
Sbjct: 61  AGTGEFEAGIS 71


>EF013389-1|ABK54743.1|  172|Apis mellifera elongation factor
           1-alpha protein.
          Length = 172

 Score =  117 bits (281), Expect = 7e-29
 Identities = 54/55 (98%), Positives = 54/55 (98%)
 Frame = +1

Query: 304 DIALWKFETGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 468
           DIALWKFET KYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS
Sbjct: 1   DIALWKFETSKYYVTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTGEFEAGIS 55


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 33.1 bits (72), Expect = 0.002
 Identities = 16/35 (45%), Positives = 18/35 (51%)
 Frame = +1

Query: 343 VTIIDAPGHRDFIKNMITGTSQADCAVLIVAAGTG 447
           VT +D PGH  FI     G    D  VL+VAA  G
Sbjct: 195 VTFLDTPGHAAFISMRHRGAHITDIVVLVVAADDG 229


>AB253417-1|BAE86928.1|  567|Apis mellifera alpha-glucosidase
           protein.
          Length = 567

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 13/34 (38%), Positives = 18/34 (52%)
 Frame = +1

Query: 328 TGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 429
           T KYY    D P +  FIKN+   ++ +D   LI
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLI 327


>D79208-1|BAA11466.1|  567|Apis mellifera alpha-glucosidase protein.
          Length = 567

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 328 TGKYYVTIIDAPGHRDFIKNMITGTSQADCAVLI 429
           T KYY    D P +  FIKN+   ++ +D   L+
Sbjct: 294 TMKYYDYGADFPFNFAFIKNVSRDSNSSDFKKLV 327


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 20.6 bits (41), Expect = 8.8
 Identities = 5/11 (45%), Positives = 9/11 (81%)
 Frame = -2

Query: 202 RWYVCRYHRIC 170
           RW + ++HR+C
Sbjct: 186 RWDLGKFHRVC 196


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,008
Number of Sequences: 438
Number of extensions: 2565
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12682287
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)