Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J18
         (463 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1...    26   3.2  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    26   3.2  
SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase Ssp2|Schiz...    25   4.3  
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub...    25   4.3  
SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces ...    25   5.6  
SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces p...    25   5.6  
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom...    25   5.6  
SPBC146.03c |cut3|smc4, smc4|condensin subunit Cut3|Schizosaccha...    25   7.4  
SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase |Schizosacc...    25   7.4  

>SPAC27D7.14c |tpr1|SPAC637.02c|RNA polymerase II associated Paf1
           complex subunit Tpr1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1039

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 299 NLPDGLQYAQRALQTPANTPESSTXMEYKVISE 397
           N    LQ+ QRA +T  N P +S+ +E  V S+
Sbjct: 270 NYGKALQHIQRAFKTRNNDPVASSILERYVYSK 302


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 7/23 (30%), Positives = 16/23 (69%)
 Frame = +3

Query: 303 CPTDYNTRKELFKHLQIHQKVQP 371
           C   + T++ L +H+++H+K +P
Sbjct: 90  CDAQFYTQQHLERHIEVHRKPKP 112


>SPCC74.03c |ssp2|ucp9|serine/threonine protein kinase
           Ssp2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 576

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 15/51 (29%), Positives = 25/51 (49%)
 Frame = +1

Query: 298 KFARRTTIRAKSSSNTCKYTRKFNXNGVQSYFGSCQGEAEVKVFYVFKDLQ 450
           K   RT   A S+ +T + TRK +      +   C+G+A   +  V++ LQ
Sbjct: 424 KLEMRTLADAASAVDTSQSTRKKSRRNKWHFGVRCRGDAPEILLAVYRALQ 474


>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
           subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 544

 Score = 25.4 bits (53), Expect = 4.3
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +2

Query: 14  IKGQKTRQQNRTKKLISEQDEEIKAKVEPLKK 109
           +K +K RQQ   +K + EQ++    K++ L+K
Sbjct: 98  LKREKERQQREQEKKLREQEKIAAKKMKELEK 129


>SPAC13G7.02c |ssa1||heat shock protein Ssa1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 644

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 238 KGKEDLALHRRRVHRKRFPCKFARRTTIRAKSSS 339
           K K+D+  + R V R R  C+ A+RT   +  +S
Sbjct: 246 KNKKDITGNARAVRRLRTACERAKRTLSSSAQAS 279


>SPCC1739.13 |ssa2||heat shock protein Ssa2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 647

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = +1

Query: 238 KGKEDLALHRRRVHRKRFPCKFARRTTIRAKSSS 339
           K K+D+  + R V R R  C+ A+RT   +  +S
Sbjct: 246 KNKKDITGNARAVRRLRTACERAKRTLSSSAQAS 279


>SPBC2F12.13 |klp5|sot1|kinesin-like protein
           Klp5|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 883

 Score = 25.0 bits (52), Expect = 5.6
 Identities = 16/60 (26%), Positives = 27/60 (45%), Gaps = 1/60 (1%)
 Frame = -1

Query: 289 TVSCEPVADVTPSLLYPLLKXCLGH-VSTGRSSMSYMLCDFRHVSMRLLRRNITTSTLIA 113
           T   E +AD+ P L+Y   +  + H ++T +   + M  D     + LL+  I    L A
Sbjct: 522 TRRAEIIADIDPELVYQKFQRSVSHIINTYKQEGATMYADVLQDEVDLLKSIIENQVLDA 581


>SPBC146.03c |cut3|smc4, smc4|condensin subunit
           Cut3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1324

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = +2

Query: 44  RTKKLISEQDEEIKAKVEPLKKEGYECT 127
           +T++ ISE++EE+K+  E   K   +CT
Sbjct: 395 QTERDISEKNEEVKSLREKAAKVKNDCT 422


>SPAC13C5.05c |||N-acetylglucosamine-phosphate mutase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 518

 Score = 24.6 bits (51), Expect = 7.4
 Identities = 21/70 (30%), Positives = 30/70 (42%), Gaps = 6/70 (8%)
 Frame = -1

Query: 310 VGQIYTGTVSCEPVA----DVTPSL--LYPLLKXCLGHVSTGRSSMSYMLCDFRHVSMRL 149
           + Q  T T +C+P      D  PS   L  LLK CL  +S       Y+     H  +RL
Sbjct: 94  IKQFLTPT-TCQPKVIIGYDTRPSSPRLAELLKVCLDEMSASYIDYGYITTPQLHWLVRL 152

Query: 148 LRRNITTSTL 119
           + ++   S L
Sbjct: 153 INKSTAASFL 162


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,852,448
Number of Sequences: 5004
Number of extensions: 36410
Number of successful extensions: 120
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 120
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 174340060
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)