Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_J18
(463 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_04_0367 - 20672776-20673550,20674097-20674320,20674626-206748... 33 0.15
12_02_1286 - 27555143-27555191,27555290-27555511,27555911-275561... 30 1.0
05_01_0004 - 34967-35149,35340-35501,36078-36225,36309-36385,365... 28 3.2
01_01_0540 + 3957622-3960903 28 4.2
06_01_0993 + 7710016-7710977,7711081-7711316,7711422-7711501,771... 27 5.6
05_02_0099 - 6582498-6582725,6583148-6583235,6583437-6583830,658... 27 5.6
04_03_0070 + 10677677-10679989 27 9.7
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 27 9.7
>05_04_0367 -
20672776-20673550,20674097-20674320,20674626-20674843,
20675133-20676534
Length = 872
Score = 32.7 bits (71), Expect = 0.15
Identities = 22/80 (27%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
Frame = +2
Query: 119 ECTCGNVSAKKSHGNMSEVA*HVRHTAPTRADVSQAXF*QRVKKTWRYIG-DGFTGNGSR 295
+C CG +A HG E++ R A R++ W Y D + +
Sbjct: 120 DCACGAAAAAAGHGVRGEISPPAEELQERRIPEPGAS--SRLQMPWEYAPYDPYPSSFPN 177
Query: 296 VNLPDGLQYAQRALQTPANT 355
V P+ Y +A TPANT
Sbjct: 178 VTFPN--YYYMKASSTPANT 195
>12_02_1286 - 27555143-27555191,27555290-27555511,27555911-27556162,
27556683-27557062,27557202-27557311,27557864-27558033,
27558236-27558444,27558528-27558617,27559125-27559264,
27559356-27559463,27559626-27559716,27560736-27560852,
27561497-27561767,27561892-27562193,27562400-27562469,
27563464-27563702,27564613-27564846,27564943-27565179,
27565276-27565734
Length = 1249
Score = 29.9 bits (64), Expect = 1.0
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 59 ISEQDEEIKAKVEPLKKEGYECTCGNVSAKKSHGNMS 169
IS Q EE+KA+ E K + EC G K+ +G+++
Sbjct: 900 ISNQMEELKAEAEDWKSKSDECETGIDELKEKNGSVA 936
>05_01_0004 -
34967-35149,35340-35501,36078-36225,36309-36385,
36507-36577,36850-37263,37518-38268
Length = 601
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +2
Query: 263 IGDGFTGNGSRVNLPDGLQYAQRALQTPANTPESSTXMEYKVISEV 400
+G+G G+ + +LPDG Q A + L+ E E ++IS V
Sbjct: 308 LGEGGFGSVYKGHLPDGKQVAVKQLKDGGGQGEREFQAEVEIISRV 353
>01_01_0540 + 3957622-3960903
Length = 1093
Score = 27.9 bits (59), Expect = 4.2
Identities = 17/60 (28%), Positives = 24/60 (40%)
Frame = +2
Query: 242 VKKTWRYIGDGFTGNGSRVNLPDGLQYAQRALQTPANTPESSTXMEYKVISEVVKGRQKL 421
VK W++ GDG G G+ + DG A+ A A P + +GR L
Sbjct: 84 VKGDWKHDGDGDGGGGAPLLPFDGTDVAEDAAAGAARDPLPLASFSLTHVDAARRGRTAL 143
>06_01_0993 +
7710016-7710977,7711081-7711316,7711422-7711501,
7711977-7712072,7712995-7713892,7713983-7714093,
7714657-7714751
Length = 825
Score = 27.5 bits (58), Expect = 5.6
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = +2
Query: 284 NGSRVNLPDGLQYAQRALQTPANTPESSTXMEYKVISEVVKGRQKLKCFMCSKTYS 451
+ SR+N+ A Q P+ P+ ++ V+S +K Q MCS+++S
Sbjct: 482 SNSRININSASGRASNDSQAPSVQPQKCGPVDSTVVSMALKREQFSIPSMCSESFS 537
>05_02_0099 -
6582498-6582725,6583148-6583235,6583437-6583830,
6585855-6585990,6586413-6586931
Length = 454
Score = 27.5 bits (58), Expect = 5.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 263 IGDGFTGNGSRVNLPDGLQYAQRALQTPANTPESSTXMEYKVISEV 400
+G G G R LPDG + A + + P E ME +++S +
Sbjct: 135 VGQGSFGAVYRGVLPDGRKVAVKLMDRPGKQGEEEFEMEVELLSRL 180
>04_03_0070 + 10677677-10679989
Length = 770
Score = 26.6 bits (56), Expect = 9.7
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 296 VNLPDGLQYAQRALQTPANTPESSTXMEYKVISEV 400
VNLP+G +RA+ TPA P SS E ++ +
Sbjct: 320 VNLPNGASVFERAVPTPA--PASSDYAEQLMLEAI 352
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 26.6 bits (56), Expect = 9.7
Identities = 13/51 (25%), Positives = 18/51 (35%)
Frame = -1
Query: 313 SVGQIYTGTVSCEPVADVTPSLLYPLLKXCLGHVSTGRSSMSYMLCDFRHV 161
++G I G + E AD+ P + C G Y C F V
Sbjct: 44 TIGSIPAGRIKMELFADIVPKTAENFRQFCTGEHRKSGLPQGYKGCQFHRV 94
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,801,223
Number of Sequences: 37544
Number of extensions: 237004
Number of successful extensions: 627
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 620
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 627
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 919380308
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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