Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J18
         (463 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC046124-1|AAH46124.2|  805|Homo sapiens RSF1 protein protein.         35   0.12 
AF380176-1|AAK57515.1| 1431|Homo sapiens HBV pX associated prote...    35   0.12 
AF227948-1|AAF61709.2| 1189|Homo sapiens HBV pX associated prote...    35   0.12 
AF059317-1|AAG43114.1|  450|Homo sapiens My001 protein protein.        34   0.21 
AJ272204-1|CAC01125.1|  999|Homo sapiens hypothetical protein pr...    31   2.5  

>BC046124-1|AAH46124.2|  805|Homo sapiens RSF1 protein protein.
          Length = 805

 Score = 35.1 bits (77), Expect = 0.12
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 14  IKGQKTRQQNRTKKLISEQDEEIKAKVEPLKKEGYECTCGNVSAKKS 154
           +K +K   +N  KK+I E+ +  K  V+P+K E  EC       K S
Sbjct: 94  VKLEKPLPENEEKKIIKEESDSFKENVKPIKVEVKECRADPKDTKSS 140


>AF380176-1|AAK57515.1| 1431|Homo sapiens HBV pX associated protein
           8 large isoform protein.
          Length = 1431

 Score = 35.1 bits (77), Expect = 0.12
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 14  IKGQKTRQQNRTKKLISEQDEEIKAKVEPLKKEGYECTCGNVSAKKS 154
           +K +K   +N  KK+I E+ +  K  V+P+K E  EC       K S
Sbjct: 283 VKLEKPLPENEEKKIIKEESDSFKENVKPIKVEVKECRADPKDTKSS 329


>AF227948-1|AAF61709.2| 1189|Homo sapiens HBV pX associated
           protein-8 protein.
          Length = 1189

 Score = 35.1 bits (77), Expect = 0.12
 Identities = 16/47 (34%), Positives = 24/47 (51%)
 Frame = +2

Query: 14  IKGQKTRQQNRTKKLISEQDEEIKAKVEPLKKEGYECTCGNVSAKKS 154
           +K +K   +N  KK+I E+ +  K  V+P+K E  EC       K S
Sbjct: 41  VKLEKPLPENEEKKIIKEESDSFKENVKPIKVEVKECRADPKDTKSS 87


>AF059317-1|AAG43114.1|  450|Homo sapiens My001 protein protein.
          Length = 450

 Score = 34.3 bits (75), Expect = 0.21
 Identities = 16/49 (32%), Positives = 24/49 (48%)
 Frame = +2

Query: 8   GFIKGQKTRQQNRTKKLISEQDEEIKAKVEPLKKEGYECTCGNVSAKKS 154
           G +K +K   +N   K+I E+ +  K  V+P+K E  EC       K S
Sbjct: 178 GIVKLEKPLPENEENKIIKEESDPSKENVKPIKVEVKECRADPKDTKSS 226


>AJ272204-1|CAC01125.1|  999|Homo sapiens hypothetical protein
           protein.
          Length = 999

 Score = 30.7 bits (66), Expect = 2.5
 Identities = 16/54 (29%), Positives = 30/54 (55%)
 Frame = +2

Query: 53  KLISEQDEEIKAKVEPLKKEGYECTCGNVSAKKSHGNMSEVA*HVRHTAPTRAD 214
           ++++ + E +K KV P KKE YE   G   AKK    + +++ H++   P  ++
Sbjct: 190 QVLAREAEFLKIKV-PTKKEMYEIKAGGSIAKKFSAALQKLSSHLQPRVPEHSN 242


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,762,560
Number of Sequences: 237096
Number of extensions: 1298982
Number of successful extensions: 4361
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 3777
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4361
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 3929066862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)