Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_J18
(463 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z82069-4|CAB04905.1| 290|Caenorhabditis elegans Hypothetical pr... 29 1.2
U42834-3|AAA83583.2| 860|Caenorhabditis elegans Hypothetical pr... 28 3.7
U28731-9|AAA68301.2| 437|Caenorhabditis elegans Hypothetical pr... 28 3.7
AF077542-1|AAC26295.2| 386|Caenorhabditis elegans Serpentine re... 28 3.7
Z81491-17|CAO82030.1| 959|Caenorhabditis elegans Hypothetical p... 27 4.9
Z81092-2|CAB03145.3| 959|Caenorhabditis elegans Hypothetical pr... 27 4.9
Z50741-1|CAA90609.1| 395|Caenorhabditis elegans Hypothetical pr... 27 4.9
U46673-3|AAC48151.1| 506|Caenorhabditis elegans Aldehyde dehydr... 27 8.6
U00048-7|AAB53831.2| 752|Caenorhabditis elegans Hypothetical pr... 27 8.6
AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical ... 27 8.6
>Z82069-4|CAB04905.1| 290|Caenorhabditis elegans Hypothetical
protein W04A8.5 protein.
Length = 290
Score = 29.5 bits (63), Expect = 1.2
Identities = 19/61 (31%), Positives = 32/61 (52%)
Frame = +2
Query: 44 RTKKLISEQDEEIKAKVEPLKKEGYECTCGNVSAKKSHGNMSEVA*HVRHTAPTRADVSQ 223
+TKKLIS + A+ E KK+ V A++S+ + ++ +R T R D++Q
Sbjct: 38 KTKKLISSNIRDFVARQEHYKKQDISV---RVVAERSYMEVIAISPKIRSTRFKRNDINQ 94
Query: 224 A 226
A
Sbjct: 95 A 95
>U42834-3|AAA83583.2| 860|Caenorhabditis elegans Hypothetical
protein F28B4.2 protein.
Length = 860
Score = 27.9 bits (59), Expect = 3.7
Identities = 14/30 (46%), Positives = 20/30 (66%)
Frame = -1
Query: 94 HFSLNFFVLFRNKLFRAILLPCLLTFYKTL 5
HF++ FF +R+ AI+L CLL Y+TL
Sbjct: 91 HFNV-FFATYRSFTDSAIVLDCLLRRYETL 119
>U28731-9|AAA68301.2| 437|Caenorhabditis elegans Hypothetical
protein F12A10.8 protein.
Length = 437
Score = 27.9 bits (59), Expect = 3.7
Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = +2
Query: 8 GFIKGQKTRQQ-NRTKKLISEQDEEIKAKVEPLKKE 112
G K Q+TR Q K+L SE++EE + K + KKE
Sbjct: 111 GVKKDQQTRNQLPPMKRLNSEEEEEQQGKTKTTKKE 146
>AF077542-1|AAC26295.2| 386|Caenorhabditis elegans Serpentine
receptor, class w protein66 protein.
Length = 386
Score = 27.9 bits (59), Expect = 3.7
Identities = 18/43 (41%), Positives = 21/43 (48%)
Frame = +3
Query: 165 CLKSHNMYDILLLPVLTCPRHXFNKG*RRLGVTSATGSQETVP 293
CL H+ Y +L C R N R+ VTS T SQE VP
Sbjct: 338 CLGVHSQYRKSAKELLFCERIYKNLKTSRISVTSTT-SQENVP 379
>Z81491-17|CAO82030.1| 959|Caenorhabditis elegans Hypothetical
protein F58D12.3 protein.
Length = 959
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +2
Query: 296 VNLPDGLQY--AQRALQTPAN-TPESSTXMEYKVISEVVKGR 412
+N P LQY A ++T TP+S+ M+Y V+S ++ GR
Sbjct: 173 INTPVKLQYYTANPMVRTKIILTPDSTEFMDYNVLSSLIIGR 214
>Z81092-2|CAB03145.3| 959|Caenorhabditis elegans Hypothetical
protein F58D12.3 protein.
Length = 959
Score = 27.5 bits (58), Expect = 4.9
Identities = 16/42 (38%), Positives = 25/42 (59%), Gaps = 3/42 (7%)
Frame = +2
Query: 296 VNLPDGLQY--AQRALQTPAN-TPESSTXMEYKVISEVVKGR 412
+N P LQY A ++T TP+S+ M+Y V+S ++ GR
Sbjct: 173 INTPVKLQYYTANPMVRTKIILTPDSTEFMDYNVLSSLIIGR 214
>Z50741-1|CAA90609.1| 395|Caenorhabditis elegans Hypothetical
protein F55G7.1 protein.
Length = 395
Score = 27.5 bits (58), Expect = 4.9
Identities = 14/29 (48%), Positives = 16/29 (55%)
Frame = +2
Query: 263 IGDGFTGNGSRVNLPDGLQYAQRALQTPA 349
IGD FTGNG + GL Y R + T A
Sbjct: 236 IGDVFTGNG-QAQRSTGLNYKHRTIPTQA 263
>U46673-3|AAC48151.1| 506|Caenorhabditis elegans Aldehyde
dehydrogenase protein 10 protein.
Length = 506
Score = 26.6 bits (56), Expect = 8.6
Identities = 10/23 (43%), Positives = 16/23 (69%)
Frame = +2
Query: 74 EEIKAKVEPLKKEGYECTCGNVS 142
E++K+ +E KKEG + CG V+
Sbjct: 354 EKVKSYIELAKKEGADILCGGVT 376
>U00048-7|AAB53831.2| 752|Caenorhabditis elegans Hypothetical
protein C05D11.9 protein.
Length = 752
Score = 26.6 bits (56), Expect = 8.6
Identities = 15/46 (32%), Positives = 24/46 (52%)
Frame = +1
Query: 244 KEDLALHRRRVHRKRFPCKFARRTTIRAKSSSNTCKYTRKFNXNGV 381
+E A H H K+ P +FARR KS+++ K+ R + G+
Sbjct: 65 REFAAAHLISKHAKKCPSRFARR-----KSANSRTKFGRSTSTKGI 105
>AF026212-2|AAF99972.1| 1009|Caenorhabditis elegans Hypothetical
protein F52G3.4 protein.
Length = 1009
Score = 26.6 bits (56), Expect = 8.6
Identities = 13/31 (41%), Positives = 18/31 (58%), Gaps = 2/31 (6%)
Frame = -1
Query: 100 RFHFS--LNFFVLFRNKLFRAILLPCLLTFY 14
R+H + LN + FRN+ FR+ L CL Y
Sbjct: 71 RYHLNQDLNMEITFRNRRFRSESLQCLERMY 101
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,458,400
Number of Sequences: 27780
Number of extensions: 214772
Number of successful extensions: 741
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 652
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 818426686
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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