Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J18
         (463 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    25   0.40 
AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.             25   0.40 
DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450 monoo...    22   3.7  
AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.7  
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    21   4.9  
AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein ...    21   6.5  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    21   8.5  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   8.5  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    21   8.5  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 74  EEIKAKVEPLKKEGYECTCGNVSAKKSHGN 163
           EEI  +   +   GY  TC N  +++S G+
Sbjct: 3   EEISTENAKVSDSGYSNTCSNSQSQRSSGS 32


>AB086196-1|BAD06465.1|  289|Apis mellifera Period protein.
          Length = 289

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 74  EEIKAKVEPLKKEGYECTCGNVSAKKSHGN 163
           EEI  +   +   GY  TC N  +++S G+
Sbjct: 3   EEISTENAKVSDSGYSNTCSNSQSQRSSGS 32


>DQ244075-1|ABB36785.1|  548|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 548

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +2

Query: 71  DEEIKAKVEPLKKEGYECTCGNVS 142
           D+E+K +V+ +  EG++ T    S
Sbjct: 335 DKEVKEQVDTIMFEGHDTTASGSS 358


>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 21.8 bits (44), Expect = 3.7
 Identities = 8/27 (29%), Positives = 17/27 (62%)
 Frame = +2

Query: 383 KVISEVVKGRQKLKCFMCSKTYSELSE 463
           K++ EV+K RQK +  + +K +   ++
Sbjct: 403 KILQEVIKFRQKQRAEILAKEHKAAAD 429


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 21.4 bits (43), Expect = 4.9
 Identities = 8/17 (47%), Positives = 11/17 (64%)
 Frame = -2

Query: 168 DMFPCDFFAETLPQVHS 118
           DMF C    ET+P ++S
Sbjct: 610 DMFNCVVVEETIPSLNS 626


>AY338499-1|AAR08420.1|  500|Apis mellifera Kruppel-like protein 1
           protein.
          Length = 500

 Score = 21.0 bits (42), Expect = 6.5
 Identities = 7/14 (50%), Positives = 10/14 (71%)
 Frame = +2

Query: 407 GRQKLKCFMCSKTY 448
           G +  KC +CSKT+
Sbjct: 172 GERPHKCTVCSKTF 185


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 186 TCYATSDMFPCDFFAETLP 130
           T  A SD    D+FA T+P
Sbjct: 102 TAKALSDKTRFDYFARTVP 120


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 462 SESSL*VFEHIKHFNFCLPLTTSEI 388
           S S + + E +KHF     +TTS++
Sbjct: 253 STSRIVISESLKHFTIQSSVTTSKM 277


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 20.6 bits (41), Expect = 8.5
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -2

Query: 186 TCYATSDMFPCDFFAETLP 130
           T  A SD    D+FA T+P
Sbjct: 192 TAKALSDKTRFDYFARTVP 210


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 120,648
Number of Sequences: 438
Number of extensions: 2408
Number of successful extensions: 9
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12312900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)