Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J15
         (490 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_06_0758 - 36052261-36052301,36052463-36052697,36052895-360529...    29   2.0  
01_01_0671 - 5137787-5137843,5138420-5138503,5138595-5138662,513...    28   4.6  

>03_06_0758 -
           36052261-36052301,36052463-36052697,36052895-36052966,
           36056477-36056567,36056650-36056872,36056964-36057300,
           36057406-36057588
          Length = 393

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +2

Query: 155 VGLEKNGSSASVTMKRINNSILYNQPTGGNS*CLVKKSGS 274
           VGL+++ +S+S  +   ++ IL N PT GN+   V + G+
Sbjct: 341 VGLQESAASSSSMVDENHHEILTNGPTSGNNQAPVVEDGA 380


>01_01_0671 -
           5137787-5137843,5138420-5138503,5138595-5138662,
           5138854-5138935,5139282-5139346,5139504-5139747
          Length = 199

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 19/67 (28%), Positives = 33/67 (49%)
 Frame = +2

Query: 35  ENLKQLKGGVDIKKEVIREVISESLRFKRKALAKMLEDFLVGLEKNGSSASVTMKRINNS 214
           E +K+L GG   KK+    VI + +R KRK +  +    L G++ + +S  +  K    +
Sbjct: 90  EEVKRLPGGKVKKKDKQEVVIEKIVRNKRKCVTVVKGLELFGVKLSDASKKLGKKFATGA 149

Query: 215 ILYNQPT 235
            +   PT
Sbjct: 150 SVVKGPT 156


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,725,896
Number of Sequences: 37544
Number of extensions: 214667
Number of successful extensions: 403
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 403
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)