Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J15
         (490 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL391380-1|CAI40723.1|  861|Homo sapiens DEAD/H (Asp-Glu-Ala-Asp...    39   0.008
AL357834-1|CAI40867.1|  861|Homo sapiens DEAD/H (Asp-Glu-Ala-Asp...    39   0.008
AK123209-1|BAC85559.1|  308|Homo sapiens protein ( Homo sapiens ...    39   0.008
BC039829-1|AAH39829.1|  887|Homo sapiens integrator complex subu...    39   0.011
AL354820-1|CAI15586.1|  887|Homo sapiens integrator complex subu...    39   0.011
AL137780-2|CAI12905.1|  887|Homo sapiens integrator complex subu...    39   0.011
AL117626-1|CAB56020.1|  476|Homo sapiens hypothetical protein pr...    39   0.011
AF141326-1|AAD39481.1|  615|Homo sapiens RNA helicase HDB/DICE1 ...    39   0.011
AF097645-1|AAF03046.1|  887|Homo sapiens candidate tumor suppres...    39   0.011
AK126202-1|BAC86484.1|  176|Homo sapiens se subunit Tad2p.  prot...    38   0.014
AK096373-1|BAC04770.1|  204|Homo sapiens protein ( Homo sapiens ...    30   4.9  

>AL391380-1|CAI40723.1|  861|Homo sapiens DEAD/H
           (Asp-Glu-Ala-Asp/His) box polypeptide 26B protein.
          Length = 861

 Score = 39.1 bits (87), Expect = 0.008
 Identities = 16/48 (33%), Positives = 32/48 (66%)
 Frame = +2

Query: 11  GKDFTKLFENLKQLKGGVDIKKEVIREVISESLRFKRKALAKMLEDFL 154
           G+ + ++F  L++++G +++KK+ +   I E+ RFKR+ L + LE  L
Sbjct: 793 GRKYERIFILLEEVQGPLEMKKQFVEFTIKEAARFKRRVLIQYLEKVL 840


>AL357834-1|CAI40867.1|  861|Homo sapiens DEAD/H
           (Asp-Glu-Ala-Asp/His) box polypeptide 26B protein.
          Length = 861

 Score = 39.1 bits (87), Expect = 0.008
 Identities = 16/48 (33%), Positives = 32/48 (66%)
 Frame = +2

Query: 11  GKDFTKLFENLKQLKGGVDIKKEVIREVISESLRFKRKALAKMLEDFL 154
           G+ + ++F  L++++G +++KK+ +   I E+ RFKR+ L + LE  L
Sbjct: 793 GRKYERIFILLEEVQGPLEMKKQFVEFTIKEAARFKRRVLIQYLEKVL 840


>AK123209-1|BAC85559.1|  308|Homo sapiens protein ( Homo sapiens
           cDNA FLJ41215 fis, clone BRALZ2017359, weakly  similar
           to Homo sapiens RNA helicase HDB/DICE1 mRNA. ).
          Length = 308

 Score = 39.1 bits (87), Expect = 0.008
 Identities = 16/48 (33%), Positives = 32/48 (66%)
 Frame = +2

Query: 11  GKDFTKLFENLKQLKGGVDIKKEVIREVISESLRFKRKALAKMLEDFL 154
           G+ + ++F  L++++G +++KK+ +   I E+ RFKR+ L + LE  L
Sbjct: 240 GRKYERIFILLEEVQGPLEMKKQFVEFTIKEAARFKRRVLIQYLEKVL 287


>BC039829-1|AAH39829.1|  887|Homo sapiens integrator complex subunit
           6 protein.
          Length = 887

 Score = 38.7 bits (86), Expect = 0.011
 Identities = 16/48 (33%), Positives = 31/48 (64%)
 Frame = +2

Query: 11  GKDFTKLFENLKQLKGGVDIKKEVIREVISESLRFKRKALAKMLEDFL 154
           G+ + ++F  LK ++G +  +   ++ VI E+ RFK++ L + LE+FL
Sbjct: 824 GRKYERIFTLLKHVQGSLQTRLIFLQNVIKEASRFKKRMLIEQLENFL 871


>AL354820-1|CAI15586.1|  887|Homo sapiens integrator complex subunit
           6 protein.
          Length = 887

 Score = 38.7 bits (86), Expect = 0.011
 Identities = 16/48 (33%), Positives = 31/48 (64%)
 Frame = +2

Query: 11  GKDFTKLFENLKQLKGGVDIKKEVIREVISESLRFKRKALAKMLEDFL 154
           G+ + ++F  LK ++G +  +   ++ VI E+ RFK++ L + LE+FL
Sbjct: 824 GRKYERIFTLLKHVQGSLQTRLIFLQNVIKEASRFKKRMLIEQLENFL 871


>AL137780-2|CAI12905.1|  887|Homo sapiens integrator complex subunit
           6 protein.
          Length = 887

 Score = 38.7 bits (86), Expect = 0.011
 Identities = 16/48 (33%), Positives = 31/48 (64%)
 Frame = +2

Query: 11  GKDFTKLFENLKQLKGGVDIKKEVIREVISESLRFKRKALAKMLEDFL 154
           G+ + ++F  LK ++G +  +   ++ VI E+ RFK++ L + LE+FL
Sbjct: 824 GRKYERIFTLLKHVQGSLQTRLIFLQNVIKEASRFKKRMLIEQLENFL 871


>AL117626-1|CAB56020.1|  476|Homo sapiens hypothetical protein
           protein.
          Length = 476

 Score = 38.7 bits (86), Expect = 0.011
 Identities = 16/48 (33%), Positives = 31/48 (64%)
 Frame = +2

Query: 11  GKDFTKLFENLKQLKGGVDIKKEVIREVISESLRFKRKALAKMLEDFL 154
           G+ + ++F  LK ++G +  +   ++ VI E+ RFK++ L + LE+FL
Sbjct: 413 GRKYERIFTLLKHVQGSLQTRLIFLQNVIKEASRFKKRMLIEQLENFL 460


>AF141326-1|AAD39481.1|  615|Homo sapiens RNA helicase HDB/DICE1
           protein.
          Length = 615

 Score = 38.7 bits (86), Expect = 0.011
 Identities = 16/48 (33%), Positives = 31/48 (64%)
 Frame = +2

Query: 11  GKDFTKLFENLKQLKGGVDIKKEVIREVISESLRFKRKALAKMLEDFL 154
           G+ + ++F  LK ++G +  +   ++ VI E+ RFK++ L + LE+FL
Sbjct: 552 GRKYERIFTLLKHVQGSLQTRLIFLQNVIKEASRFKKRMLIEQLENFL 599


>AF097645-1|AAF03046.1|  887|Homo sapiens candidate tumor suppressor
           protein DICE1 protein.
          Length = 887

 Score = 38.7 bits (86), Expect = 0.011
 Identities = 16/48 (33%), Positives = 31/48 (64%)
 Frame = +2

Query: 11  GKDFTKLFENLKQLKGGVDIKKEVIREVISESLRFKRKALAKMLEDFL 154
           G+ + ++F  LK ++G +  +   ++ VI E+ RFK++ L + LE+FL
Sbjct: 824 GRKYERIFTLLKHVQGSLQTRLIFLQNVIKEASRFKKRMLIEQLENFL 871


>AK126202-1|BAC86484.1|  176|Homo sapiens se subunit Tad2p.
           protein.
          Length = 176

 Score = 38.3 bits (85), Expect = 0.014
 Identities = 15/45 (33%), Positives = 31/45 (68%)
 Frame = +2

Query: 11  GKDFTKLFENLKQLKGGVDIKKEVIREVISESLRFKRKALAKMLE 145
           G+ + ++F  L++++G +++KK+ +   I E+ RFKR+ L + LE
Sbjct: 112 GRKYERIFILLEEVQGPLEMKKQFVEFTIKEAARFKRRVLIQYLE 156


>AK096373-1|BAC04770.1|  204|Homo sapiens protein ( Homo sapiens
           cDNA FLJ39054 fis, clone NT2RP7012516. ).
          Length = 204

 Score = 29.9 bits (64), Expect = 4.9
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 6/81 (7%)
 Frame = -2

Query: 246 LFPPVGWL*RI-ELLILFIVTDALLP-----FFSKPTRKSSSILASAFLLNRNDSLITSR 85
           LF P+  L  +   + LF+ + + LP     FFS     S S L S FL +   S + S 
Sbjct: 26  LFSPLSLLFFLFSSVFLFLFSSSPLPLSLSSFFSSSFSFSFSSLLSLFLPSFFPSFLPSF 85

Query: 84  ITSFLISTPPFNCFKFSNSFV 22
           + SF  S PP + F F + F+
Sbjct: 86  LPSFPPSLPPSSLFLFLSFFL 106


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 63,933,733
Number of Sequences: 237096
Number of extensions: 1267200
Number of successful extensions: 5626
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 5592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5626
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4366354454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)