Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_J14
(562 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_06_0219 + 26479708-26479710,26481045-26481173,26481675-264818... 31 0.83
04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016 31 0.83
02_05_0484 - 29401195-29401404,29401572-29401755,29401866-294039... 29 1.9
01_06_1713 - 39359558-39359590,39360000-39360074,39360437-393606... 29 1.9
08_02_1368 + 26440962-26441108,26441293-26441379,26441468-264415... 29 3.4
01_06_0481 - 29646245-29646371,29646474-29646556,29646672-296467... 29 3.4
10_08_0043 - 14390398-14391531,14391850-14393691,14393800-143968... 28 4.4
12_02_0726 - 22552005-22552035,22552507-22552598,22552970-225530... 27 7.7
10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,610... 27 7.7
04_04_0610 + 26590974-26591008,26591111-26591540,26591698-265918... 27 7.7
01_02_0049 + 10641363-10641563,10641640-10641750,10641893-106421... 27 7.7
>05_06_0219 + 26479708-26479710,26481045-26481173,26481675-26481818,
26481936-26482081,26482185-26482341,26482489-26482547,
26482787-26482946,26483020-26483169,26483279-26483415,
26483518-26483664,26483733-26483834,26483917-26483974,
26484084-26484185,26484322-26484379,26484717-26484775,
26486488-26486525,26486688-26486814,26486900-26487067,
26487879-26488010,26488089-26488198,26488273-26488333,
26488761-26488938,26489041-26489246,26489431-26489550,
26489631-26489729,26489968-26490156,26490291-26490430,
26491149-26491316,26491438-26491605,26491764-26491931,
26492250-26492417,26492533-26492700,26492853-26493020,
26493118-26493285,26493471-26493638,26493756-26493920,
26494679-26494850,26495012-26495175,26495296-26495405,
26495481-26495596,26495686-26495766,26495849-26496034,
26496203-26496547,26496637-26496777,26496869-26496916,
26497162-26497242,26497350-26497406,26497495-26497575,
26497675-26497757,26497842-26497968
Length = 2159
Score = 30.7 bits (66), Expect = 0.83
Identities = 15/60 (25%), Positives = 37/60 (61%)
Frame = +2
Query: 14 RLRQLEKSLLQALNDAKGKILDDDSVIATLETLKKEADDIGQKVEETDKVIAEIETVSQQ 193
+LRQ ++ +AL ++ G+ ++ +I + L DD+ +K+E++ +V+AE++ ++
Sbjct: 1619 KLRQESDAVRKALAESHGR---NEDLIRRNDDLLSRNDDLIKKIEDSGQVVAELQAALER 1675
>04_04_0726 + 27588225-27588685,27588768-27588895,27590523-27591016
Length = 360
Score = 30.7 bits (66), Expect = 0.83
Identities = 14/31 (45%), Positives = 18/31 (58%)
Frame = +1
Query: 334 CNRLYRPVENYHRRTVFCCV*ARRPRHVAHG 426
C+ + V+ YHRR C V A+ PR V HG
Sbjct: 113 CDITLQGVKEYHRRHKVCEVHAKAPRVVVHG 143
>02_05_0484 -
29401195-29401404,29401572-29401755,29401866-29403973,
29404320-29404403,29404507-29404777,29404864-29405117,
29405513-29405722,29406357-29406503
Length = 1155
Score = 29.5 bits (63), Expect = 1.9
Identities = 19/54 (35%), Positives = 29/54 (53%)
Frame = +2
Query: 17 LRQLEKSLLQALNDAKGKILDDDSVIATLETLKKEADDIGQKVEETDKVIAEIE 178
L + +K+L K K D + +A L +KEA+ +K+EE +K IAE E
Sbjct: 261 LEEAKKALEHTKATLKIKEDDINKRLAELHLQEKEAESKNRKLEEREKKIAERE 314
>01_06_1713 -
39359558-39359590,39360000-39360074,39360437-39360662,
39360792-39360880,39360960-39361053,39361134-39361318,
39361415-39361582,39361682-39361822,39362327-39362545,
39362628-39362744,39363154-39363248,39363662-39363743,
39363864-39363926,39364157-39364216,39364312-39364476,
39364574-39364759,39364890-39365180,39365262-39365405,
39365492-39366172,39367045-39367362
Length = 1143
Score = 29.5 bits (63), Expect = 1.9
Identities = 13/47 (27%), Positives = 29/47 (61%), Gaps = 4/47 (8%)
Frame = +2
Query: 32 KSLLQALNDAKGKILDDDSVIATLET----LKKEADDIGQKVEETDK 160
+ +L+ + D K I++ D+ + E +KK ADD+ ++++E++K
Sbjct: 332 EKILKNIEDIKRSIIERDTAVKNAEDGAADMKKRADDLTKELDESEK 378
>08_02_1368 +
26440962-26441108,26441293-26441379,26441468-26441560,
26441755-26442000,26442097-26442315,26442653-26442808,
26442893-26443052,26443148-26443299,26443375-26443462,
26443533-26443588,26444952-26445026,26445184-26445270
Length = 521
Score = 28.7 bits (61), Expect = 3.4
Identities = 13/40 (32%), Positives = 23/40 (57%)
Frame = +2
Query: 74 LDDDSVIATLETLKKEADDIGQKVEETDKVIAEIETVSQQ 193
L + S L+ LK D++GQ+ E ++++ EIE Q+
Sbjct: 65 LPESSCAYLLQELKMIWDEVGQEENERERILQEIEQECQE 104
>01_06_0481 - 29646245-29646371,29646474-29646556,29646672-29646752,
29646843-29646899,29647007-29647094,29647304-29647374,
29647457-29647585,29647662-29648051,29648332-29648517,
29648612-29648692,29648787-29648879,29648966-29649086,
29649200-29649409,29649560-29649727,29649898-29650065,
29650144-29650311,29650453-29650620,29650738-29650905,
29651023-29651190,29651567-29651734,29652391-29652558,
29652645-29652812,29655720-29655887,29656069-29656236,
29656391-29656558,29656670-29656837,29657525-29657664,
29658033-29658221,29658243-29658315,29658379-29658452,
29658535-29658654,29658718-29658738,29658794-29658999,
29659094-29659271,29660066-29660126,29660232-29660341,
29660427-29660558,29661091-29661258,29661339-29661465,
29661794-29661831,29663321-29663422,29663505-29663562,
29663659-29663760,29663844-29663990,29664098-29664234,
29664313-29664462,29664561-29664720,29665820-29665878,
29666025-29666181,29666288-29666433,29666523-29666666,
29667242-29667376
Length = 2344
Score = 28.7 bits (61), Expect = 3.4
Identities = 15/58 (25%), Positives = 33/58 (56%)
Frame = +2
Query: 20 RQLEKSLLQALNDAKGKILDDDSVIATLETLKKEADDIGQKVEETDKVIAEIETVSQQ 193
+Q + +AL +A+ + ++ ++ E L K DD+ +K+EE+ K I +++ Q+
Sbjct: 1789 KQESDAAKRALTEARER---NEDLLKRNEDLLKRNDDLIKKIEESSKTITQLQETLQR 1843
>10_08_0043 - 14390398-14391531,14391850-14393691,14393800-14396825,
14397510-14397609
Length = 2033
Score = 28.3 bits (60), Expect = 4.4
Identities = 22/105 (20%), Positives = 48/105 (45%), Gaps = 4/105 (3%)
Frame = +2
Query: 5 EDLRLRQLEKSLLQALNDAKGKILDDDSVIATLETLKKEADDIGQK--VEET--DKVIAE 172
E L + SL + ++ K + + +I L+ + + ++ K VE+ + + E
Sbjct: 864 EKQNLEGIHHSLAEEMSTLKSRSAANQKLIEDLQIMNLKLKEVCAKNEVEKALLSEKVQE 923
Query: 173 IETVSQQYLPLSQACSSIYFTMDSLNQVHFLYQYSLKMFLDIFSS 307
+E +S+++ + + S MDSL + + + S D+ SS
Sbjct: 924 VEKLSEEFSLMENSLSDANAEMDSLREKIKVLETSEGSLKDVISS 968
>12_02_0726 -
22552005-22552035,22552507-22552598,22552970-22553094,
22553221-22553311,22553475-22553755,22554211-22554394,
22554499-22554583,22554692-22554782,22554909-22555293,
22555457-22555669,22555873-22556418,22556572-22556788,
22556907-22557058,22557519-22557663,22557846-22557907,
22559130-22559291,22559393-22559482,22560055-22560215,
22560907-22560997,22561125-22561308,22561556-22561737,
22561857-22562086,22562622-22562685
Length = 1287
Score = 27.5 bits (58), Expect = 7.7
Identities = 12/42 (28%), Positives = 22/42 (52%)
Frame = +2
Query: 92 IATLETLKKEADDIGQKVEETDKVIAEIETVSQQYLPLSQAC 217
+A +T+K D I VE+ + ++ +Q LP+ +AC
Sbjct: 5 LAQFQTIKSSCDRIVVAVEDVSDLWLNVKESFEQRLPVKKAC 46
>10_02_0167 - 6100676-6102111,6102174-6102708,6102967-6103975,
6104006-6105036
Length = 1336
Score = 27.5 bits (58), Expect = 7.7
Identities = 16/51 (31%), Positives = 24/51 (47%)
Frame = +2
Query: 71 ILDDDSVIATLETLKKEADDIGQKVEETDKVIAEIETVSQQYLPLSQACSS 223
IL SV + DI +V E ++ +A+IET +PL + SS
Sbjct: 1218 ILTKPSVKEVSGEVGPNTPDISSEVIEAERAVADIETTDDWRIPLIKFISS 1268
>04_04_0610 +
26590974-26591008,26591111-26591540,26591698-26591892,
26591992-26592372
Length = 346
Score = 27.5 bits (58), Expect = 7.7
Identities = 18/46 (39%), Positives = 27/46 (58%), Gaps = 6/46 (13%)
Frame = +2
Query: 50 LNDAKGKILDDDSVIATL-----ETLKKEADDIGQKVEE-TDKVIA 169
L+ ++GKI++ S + L E L+KE DDI EE D+V+A
Sbjct: 202 LSSSEGKIVNVSSALGLLRFLGNEDLRKELDDIDNLTEERLDEVLA 247
>01_02_0049 +
10641363-10641563,10641640-10641750,10641893-10642123,
10642253-10642357,10642546-10642704
Length = 268
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/69 (28%), Positives = 35/69 (50%)
Frame = +2
Query: 5 EDLRLRQLEKSLLQALNDAKGKILDDDSVIATLETLKKEADDIGQKVEETDKVIAEIETV 184
E L QLEK+ + +++ K K+L + TL+ + + + + VE DK + ++
Sbjct: 175 EAKELSQLEKNQMTTVHELKKKVL---KLECTLKVSRAQLRKLHKMVERRDKPLKKL--- 228
Query: 185 SQQYLPLSQ 211
Q LPL Q
Sbjct: 229 -QSRLPLKQ 236
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,275,740
Number of Sequences: 37544
Number of extensions: 273686
Number of successful extensions: 874
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1281410928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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