Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J13
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein L10|Sch...   206   3e-54
SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein L10|Sc...   205   4e-54
SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    30   0.31 
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    29   0.72 
SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual       28   1.3  
SPCC1827.04 |||ankyrin repeat protein, unknown biological role|S...    27   1.7  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    27   2.2  
SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces ...    26   5.1  
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce...    26   5.1  
SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr 1||...    25   6.7  
SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces...    25   6.7  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    25   6.7  
SPAC22E12.17c |glo3||ARF GTPase activating protein|Schizosacchar...    25   8.9  
SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces po...    25   8.9  

>SPAP7G5.05 |rpl1002|rpl10-2, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 221

 Score =  206 bits (502), Expect = 3e-54
 Identities = 94/124 (75%), Positives = 108/124 (87%)
 Frame = +2

Query: 5   EARFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVK 184
           ++R+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK
Sbjct: 19  KSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVK 78

Query: 185 NCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSV 364
             GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSV
Sbjct: 79  IGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQVLMSV 138

Query: 365 RSSD 376
           R+ D
Sbjct: 139 RTKD 142



 Score = 69.7 bits (163), Expect = 3e-13
 Identities = 29/54 (53%), Positives = 39/54 (72%)
 Frame = +1

Query: 388 AQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKY 549
           A  IEALRR ++KFPG+Q+I VSKKWGF++Y R+E+ + R  G    DGC  K+
Sbjct: 146 ATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKF 199


>SPBC18E5.04 |rpl1001|rpl10-1, rpl10|60S ribosomal protein
           L10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 221

 Score =  205 bits (501), Expect = 4e-54
 Identities = 94/124 (75%), Positives = 108/124 (87%)
 Frame = +2

Query: 5   EARFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGRICCNKYLVK 184
           ++R+ R VPD KIRIFDLG+KRA VD+FPLC+HLVS+EYEQ++SEALEA RIC NKYLVK
Sbjct: 19  KSRYNRAVPDSKIRIFDLGRKRAGVDEFPLCIHLVSNEYEQITSEALEAARICANKYLVK 78

Query: 185 NCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFGKPQGTVARVRIGQPIMSV 364
             GKD FH+R+R HPFHV+RINKMLSCAGADRLQTGMR AFGKP G VARV IGQ +MSV
Sbjct: 79  IGGKDSFHLRVRAHPFHVVRINKMLSCAGADRLQTGMRHAFGKPNGLVARVNIGQILMSV 138

Query: 365 RSSD 376
           R+ D
Sbjct: 139 RTKD 142



 Score = 69.7 bits (163), Expect = 3e-13
 Identities = 29/54 (53%), Positives = 39/54 (72%)
 Frame = +1

Query: 388 AQVIEALRRAKFKFPGRQKIYVSKKWGFTKYEREEFEKLRDAGRFANDGCNVKY 549
           A  IEALRR ++KFPG+Q+I VSKKWGF++Y R+E+ + R  G    DGC  K+
Sbjct: 146 ATAIEALRRCQYKFPGQQRIIVSKKWGFSQYARDEYIEKRSRGEIIPDGCYAKF 199


>SPBP35G2.14 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1060

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 18/48 (37%), Positives = 25/48 (52%)
 Frame = -3

Query: 146 PAPQNSAARTHQTLSARIVGSHPLSLSFCPSRKYGSLGQAHPDKTEPR 3
           P P +S+ R  Q+LSA +  S+P   S  PS   GSL  +    + PR
Sbjct: 473 PKPSSSSRRRSQSLSAMLKTSNPYMPS--PSLLSGSLANSSEHSSSPR 518


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 11/29 (37%), Positives = 16/29 (55%)
 Frame = +2

Query: 518 VLLTMDATSSTRPEHGPLDVWRKFQNELH 604
           VL  ++  S+  PE  P+D WRK+    H
Sbjct: 594 VLAELEGLSALEPEDKPVDTWRKYHLLAH 622


>SPAC19D5.03 |cid1||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 405

 Score = 27.9 bits (59), Expect = 1.3
 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
 Frame = +2

Query: 11  RFCRGVPDP-KIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAG 154
           +FC  V +  KI   +  +KRA +D   LC+  +S + E ++  +LE+G
Sbjct: 46  KFCYEVYNEIKISDKEFKEKRAALDTLRLCLKRISPDAELVAFGSLESG 94


>SPCC1827.04 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 600

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +2

Query: 32  DPKIRIFDLGKKRATVDDFPLCV-HLVSDEYEQLSSEALEA 151
           DPK+R+F    KRAT  +   C   LV+ +   + S +++A
Sbjct: 320 DPKLRVFPFTTKRATHSELLRCYKELVTPKISHVDSISIKA 360


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
 Frame = -2

Query: 345 PIRTRATVPWGFPNAPRIPVWSLSAPA---HDNILLMRMTWKGCSLIRMWN*SLPQFFTR 175
           P+RT +   WG+ N   IP+W +  PA   +  I    +T      +R +  +L +FFTR
Sbjct: 81  PLRTLSRW-WGYVNRIEIPLW-MRVPAFGLYSKIFGCNLTEADPDDVRQYK-NLAEFFTR 137

Query: 174 YL 169
            L
Sbjct: 138 KL 139


>SPAC13A11.02c |erg11||sterol 14-demethylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 495

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = +2

Query: 497 RSYVMLDVLLTMDATSSTRPEHGP 568
           RSYV L +L  MDA  ST P+ GP
Sbjct: 141 RSYVPL-ILNEMDAFLSTSPDFGP 163


>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1957

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 20/53 (37%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
 Frame = +2

Query: 53   DLGKKRATVDDFPLCVHLVSDEYEQL---SSEALEAGRICCN--KYLVKNCGK 196
            ++ KKRA  DD    + +VS EYE L   SS+  ++     N  KY+ KN  K
Sbjct: 1033 EIEKKRAENDDLQSKLSVVSSEYENLLLISSQTNKSLEDKTNQLKYIEKNVQK 1085


>SPAC8E11.04c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 224

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = -2

Query: 324 VPWGFPNAPRIPV 286
           + W FPNAP IPV
Sbjct: 46  IKWIFPNAPSIPV 58


>SPBC16C6.02c |vps1302|vps13b|chorein homolog|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 3131

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 194 KDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMR 298
           +D  H+RM ++ FH   IN MLS +  D  +  MR
Sbjct: 859 EDNSHLRMSINSFH---INDMLSKSSRDNNRQLMR 890


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 16/57 (28%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
 Frame = +1

Query: 421 FKFPGRQKIYVSKKWGFT-KYEREEFEKLRDAGRFANDGCNVKYP-XRAWTPRCLEE 585
           F++   QKI +  +  +   +ER  F K  +  RF  +GC    P  +A   R ++E
Sbjct: 237 FRYSHDQKIMIFDRLSWADSFERFLFTKFPNDKRFGLEGCEAMVPGMKALIDRSVDE 293


>SPAC22E12.17c |glo3||ARF GTPase activating
           protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 486

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -1

Query: 361 RHNGLSNTHTRYCALGFPERTTHPSLEPISSSA 263
           RH G+S  +++ C L +  +T    LE + S A
Sbjct: 94  RHGGVSLLNSKDCRLKYSSKTAKQYLEKLKSLA 126


>SPAC1565.02c |||GTPase activating protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -1

Query: 91  WEVIHCRSLFAQVENTDLWVRHTPT 17
           + ++H  +LFA  EN D ++   PT
Sbjct: 343 YAILHWNTLFANEENWDSYIPQDPT 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,786,194
Number of Sequences: 5004
Number of extensions: 57370
Number of successful extensions: 179
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 172
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 179
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)