Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J12
         (320 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    28   0.40 
SPBC18H10.09 |||zinc finger protein, zf-CHY type|Schizosaccharom...    25   3.8  
SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr 1...    24   5.0  
SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   8.7  

>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 27.9 bits (59), Expect = 0.40
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 269 IGL*IWSYCHYLISYFL*QKDPIKENP 189
           +G  +WS C++LI Y L +  PI  NP
Sbjct: 26  VGTWLWSVCYHLI-YILNRYQPISPNP 51


>SPBC18H10.09 |||zinc finger protein, zf-CHY
           type|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 428

 Score = 24.6 bits (51), Expect = 3.8
 Identities = 5/12 (41%), Positives = 12/12 (100%)
 Frame = -2

Query: 151 VMRVILKCIQCH 116
           ++R+++KC++CH
Sbjct: 180 ILRLVIKCVRCH 191


>SPAC1039.06 |||alanine racemase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 415

 Score = 24.2 bits (50), Expect = 5.0
 Identities = 13/41 (31%), Positives = 19/41 (46%)
 Frame = +1

Query: 82  GGSYRRHQRDRSDTVCTLILHASHRTRTPAHHTCVHGFSLI 204
           G ++R H +       TL+     RT+     T + GFSLI
Sbjct: 60  GVTFRAHVKTHKTIEGTLLQLGDGRTKAVVVSTLMEGFSLI 100


>SPAC323.03c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 575

 Score = 23.4 bits (48), Expect = 8.7
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +3

Query: 48  IYSCVFCNSNLG 83
           +Y+C+FCN N G
Sbjct: 423 LYACLFCNLNEG 434


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,334,813
Number of Sequences: 5004
Number of extensions: 25174
Number of successful extensions: 48
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 46
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 48
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 88030718
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)