Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_J12
(320 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0159 + 14583033-14583042,14583176-14583364,14583435-14583490 29 1.1
09_01_0020 + 413723-413738,413867-413934,414849-415144,415275-41... 27 2.5
11_01_0274 - 2050667-2052115 27 3.3
01_06_0572 - 30337572-30338107,30338209-30338422,30338505-303388... 27 3.3
08_02_0574 - 18867623-18868033,18869751-18870209 27 4.3
04_04_0200 - 23529497-23531938,23532586-23533720,23534272-235344... 27 4.3
02_05_0250 + 27153048-27154453,27154546-27154885 27 4.3
04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547 26 5.7
03_02_0069 + 5401789-5401965,5403514-5403568,5403674-5405649,540... 26 7.6
01_01_1083 - 8519987-8520254,8520442-8520554 26 7.6
>12_02_0159 + 14583033-14583042,14583176-14583364,14583435-14583490
Length = 84
Score = 28.7 bits (61), Expect = 1.1
Identities = 15/44 (34%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 40 SEAYIRASFVTPTWGGSYRRHQR-DRSDTVCTLILHASHRTRTP 168
SE +I+ ++ +G S H D + TVCT I+ T TP
Sbjct: 30 SEDFIKIMYIASGFGKSPVHHDNIDVAKTVCTFIMQIDSYTSTP 73
>09_01_0020 +
413723-413738,413867-413934,414849-415144,415275-415400,
415484-415566,416514-416628,416755-416847,416963-417021,
417609-417684,417812-417901,418050-418202,418294-418480,
418752-418839,419077-419125,419233-419329
Length = 531
Score = 27.5 bits (58), Expect = 2.5
Identities = 12/19 (63%), Positives = 14/19 (73%)
Frame = +2
Query: 140 YTHHIAHALLRIIRAYMGS 196
YTHH A A LRI +A +GS
Sbjct: 15 YTHHSAPARLRITQAVLGS 33
>11_01_0274 - 2050667-2052115
Length = 482
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = +1
Query: 46 AYIRASFVTPTWGGSYRRHQRDRSDTVCTLILHAS-HR 156
AY S + P ++R D S +CTL +HAS HR
Sbjct: 25 AYGIQSHINPAQNLAHRLASIDASSVMCTLSIHASAHR 62
>01_06_0572 -
30337572-30338107,30338209-30338422,30338505-30338862,
30338948-30339048,30339185-30339749,30340553-30340664,
30341196-30341372,30341589-30341686,30341859-30341953,
30342078-30342158
Length = 778
Score = 27.1 bits (57), Expect = 3.3
Identities = 15/41 (36%), Positives = 25/41 (60%)
Frame = -2
Query: 289 VPMRYKQLGCKSGPIVTI*SPTFCNKRIQLKRTHVRTYDAQ 167
VP R+K + C+ G SP+ CN++I R +V+ Y+A+
Sbjct: 167 VPARWKGV-CQGGDSF---SPSSCNRKIIGARYYVKAYEAR 203
>08_02_0574 - 18867623-18868033,18869751-18870209
Length = 289
Score = 26.6 bits (56), Expect = 4.3
Identities = 9/13 (69%), Positives = 10/13 (76%)
Frame = -1
Query: 161 RVRCDACNIKVHT 123
R RCDACN +HT
Sbjct: 36 RYRCDACNFDMHT 48
>04_04_0200 -
23529497-23531938,23532586-23533720,23534272-23534463,
23535527-23535570
Length = 1270
Score = 26.6 bits (56), Expect = 4.3
Identities = 12/50 (24%), Positives = 24/50 (48%)
Frame = +1
Query: 16 VIIQLDNYSEAYIRASFVTPTWGGSYRRHQRDRSDTVCTLILHASHRTRT 165
V +Q+++ ++A + P+W R+ S+ C L++ TRT
Sbjct: 209 VDLQVNSCTKAIRQTEVAVPSWRSKNLDSSREPSEKKCKLVVKVGSLTRT 258
>02_05_0250 + 27153048-27154453,27154546-27154885
Length = 581
Score = 26.6 bits (56), Expect = 4.3
Identities = 10/33 (30%), Positives = 18/33 (54%)
Frame = +2
Query: 140 YTHHIAHALLRIIRAYMGSL*LDPFVTKSRRSD 238
YTH + RI++ Y+G+ F T+++ D
Sbjct: 373 YTHEVKERFNRILKKYVGTHNFHNFTTRTKAED 405
>04_04_0954 + 29631929-29632004,29632397-29633437,29634409-29635547
Length = 751
Score = 26.2 bits (55), Expect = 5.7
Identities = 18/41 (43%), Positives = 25/41 (60%)
Frame = +2
Query: 8 AMM*LYS*TIIARHIFVRLL*LQLGEALTVVTSAIAVTLYA 130
A+M L TII +H F +L +Q+ AL V T+A V L+A
Sbjct: 223 ALMQLTFETIIKKHTFSAVLNMQIYTAL-VATAASVVGLFA 262
>03_02_0069 +
5401789-5401965,5403514-5403568,5403674-5405649,
5405710-5405868,5406081-5406252,5406617-5406915,
5407147-5407392
Length = 1027
Score = 25.8 bits (54), Expect = 7.6
Identities = 10/38 (26%), Positives = 21/38 (55%)
Frame = -1
Query: 215 QKDPIKENPCTHV*CAGVRVRCDACNIKVHTVSLRSRW 102
+ +P+ N +G +V+ +C + V TV +R++W
Sbjct: 292 ESEPVAVNAENPFLLSGTKVQDGSCKMLVTTVGMRTQW 329
>01_01_1083 - 8519987-8520254,8520442-8520554
Length = 126
Score = 25.8 bits (54), Expect = 7.6
Identities = 11/36 (30%), Positives = 15/36 (41%)
Frame = +3
Query: 135 NITRITSHTHSCASYVRTWVLFNWILLLQKVGDQIV 242
N + T C S VR W W++LL V +
Sbjct: 86 NRVELQEQTDRCQSSVRFWKYLFWLILLGLVASNYI 121
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,732,728
Number of Sequences: 37544
Number of extensions: 167761
Number of successful extensions: 463
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 456
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 411066120
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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