Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0009_J12
         (320 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    22   1.6  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    20   6.4  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    20   6.4  
Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein RJP...    20   8.4  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 22.2 bits (45), Expect = 1.6
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +1

Query: 136 ILHASHRTRTPAHHTCVHGFSLI 204
           +L+  + T  P HHT  HG S I
Sbjct: 404 LLNNVYSTPGPHHHTMGHGHSHI 426


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 198  FNWILLLQKVGDQIVTIGPDLQPNCLY 278
            F+W L+   V  Q   +  +LQP+ +Y
Sbjct: 1542 FHWTLVSNSVKMQRRFVVTNLQPSSVY 1568


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 20.2 bits (40), Expect = 6.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +3

Query: 198  FNWILLLQKVGDQIVTIGPDLQPNCLY 278
            F+W L+   V  Q   +  +LQP+ +Y
Sbjct: 1538 FHWTLVSNSVKMQRRFVVTNLQPSSVY 1564


>Z26318-1|CAA81227.1|  544|Apis mellifera royal jelly protein
           RJP57-1 protein.
          Length = 544

 Score = 19.8 bits (39), Expect = 8.4
 Identities = 8/13 (61%), Positives = 9/13 (69%)
 Frame = -2

Query: 61  THEYMPRYNCLTV 23
           T +Y PRY  LTV
Sbjct: 233 TFDYDPRYTKLTV 245


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 93,490
Number of Sequences: 438
Number of extensions: 1973
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 50
effective length of database: 124,443
effective search space used:  6968808
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)