Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0009_J11
(485 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein S11|Schizosac... 155 3e-39
SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein S11|Sch... 155 3e-39
SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit S17... 34 0.010
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 27 2.0
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom... 25 4.6
SPAC23H4.15 |||ribosome biogenesis protein Tsr1 |Schizosaccharom... 25 6.1
SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase Cdc48|Schizosac... 25 6.1
SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces pomb... 25 8.0
SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit ... 25 8.0
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom... 25 8.0
>SPAC31G5.03 |rps1101|rps11-1|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 155 bits (377), Expect = 3e-39
Identities = 72/118 (61%), Positives = 89/118 (75%), Gaps = 1/118 (0%)
Frame = +3
Query: 51 QGGHEKEGYETSKNVGLGFKTPREPLKAHTLIK-CPFTGNVSIRGRILTGVVQKMKMQRT 227
Q + G K+VGLGFKTP E + + K CPF G VSIRGRILTG V KM RT
Sbjct: 21 QNAKKGAGRRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRT 80
Query: 228 IVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVL 401
I+IRR+YLH++PKYNR+EKRH+N++ H+SP FR + GD+VT+G+CRPLSKTVRFNVL
Sbjct: 81 IIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVL 137
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 10 EKAFQKQATVFLNRKGGMKRK 72
E+AFQKQ +F N K G R+
Sbjct: 10 ERAFQKQPHIFQNAKKGAGRR 30
>SPAC144.11 |rps1102|rps11-2, rps11|40S ribosomal protein
S11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 152
Score = 155 bits (377), Expect = 3e-39
Identities = 72/118 (61%), Positives = 89/118 (75%), Gaps = 1/118 (0%)
Frame = +3
Query: 51 QGGHEKEGYETSKNVGLGFKTPREPLKAHTLIK-CPFTGNVSIRGRILTGVVQKMKMQRT 227
Q + G K+VGLGFKTP E + + K CPF G VSIRGRILTG V KM RT
Sbjct: 21 QNAKKGAGRRWYKDVGLGFKTPAEAIYGEYVDKKCPFVGQVSIRGRILTGTVVSTKMHRT 80
Query: 228 IVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPLSKTVRFNVL 401
I+IRR+YLH++PKYNR+EKRH+N++ H+SP FR + GD+VT+G+CRPLSKTVRFNVL
Sbjct: 81 IIIRREYLHFIPKYNRYEKRHKNLAAHVSPAFR-INEGDVVTVGQCRPLSKTVRFNVL 137
Score = 25.8 bits (54), Expect = 3.5
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 10 EKAFQKQATVFLNRKGGMKRK 72
E+AFQKQ +F N K G R+
Sbjct: 10 ERAFQKQPHIFQNAKKGAGRR 30
>SPBC409.14c |mrps17||mitochondrial ribosomal protein subunit
S17|Schizosaccharomyces pombe|chr 2|||Manual
Length = 90
Score = 34.3 bits (75), Expect = 0.010
Identities = 20/69 (28%), Positives = 33/69 (47%)
Frame = +3
Query: 195 GVVQKMKMQRTIVIRRDYLHYLPKYNRFEKRHRNMSVHLSPCFRDVEIGDIVTIGECRPL 374
G+V M +T +R + P ++ +++N V + +GD VTI CRP
Sbjct: 7 GIVISRAMPKTAKVRVAKEKFHPVVKKYVTQYQNYMVQDD---LNCNVGDAVTIQPCRPR 63
Query: 375 SKTVRFNVL 401
S T RF ++
Sbjct: 64 SATKRFEII 72
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 26.6 bits (56), Expect = 2.0
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -1
Query: 347 DVSDFHVPEARR*MNRHVPVSL 282
DV+ + VPEARR RH PV L
Sbjct: 481 DVNYYPVPEARRSNMRHRPVGL 502
>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 421
Score = 25.4 bits (53), Expect = 4.6
Identities = 8/31 (25%), Positives = 17/31 (54%)
Frame = +3
Query: 54 GGHEKEGYETSKNVGLGFKTPREPLKAHTLI 146
G H + ++N+G+ F+TP + H+ +
Sbjct: 196 GDHNSTDLKFAENIGIKFETPEQFFLGHSFV 226
>SPAC23H4.15 |||ribosome biogenesis protein Tsr1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 783
Score = 25.0 bits (52), Expect = 6.1
Identities = 8/32 (25%), Positives = 17/32 (53%)
Frame = +3
Query: 117 REPLKAHTLIKCPFTGNVSIRGRILTGVVQKM 212
+EPL H K F G ++++ + + ++M
Sbjct: 737 KEPLGTHGYFKATFNGKITVQDTVAMSLYKRM 768
>SPAC1565.08 |cdc48|SPAC6F12.01|AAA family ATPase
Cdc48|Schizosaccharomyces pombe|chr 1|||Manual
Length = 815
Score = 25.0 bits (52), Expect = 6.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +3
Query: 330 VEIGDIVTIGECRPLSKTVRFNVL 401
V +GDIVTI C + R +VL
Sbjct: 114 VRLGDIVTINPCPDIKYAERISVL 137
>SPBC887.15c |||sphingosine hydroxylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 293
Score = 24.6 bits (51), Expect = 8.0
Identities = 10/30 (33%), Positives = 20/30 (66%)
Frame = -1
Query: 332 HVPEARR*MNRHVPVSLLKSVVFRQVMEII 243
H PE NR ++++K+V+F+Q+ E++
Sbjct: 49 HPPEEIARRNRVPQMAVVKAVLFQQLCEVV 78
>SPBC1A4.10c |pmc1|SPBP23A10.01c, med14|mediator complex subunit
Pmc1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 879
Score = 24.6 bits (51), Expect = 8.0
Identities = 18/51 (35%), Positives = 23/51 (45%), Gaps = 7/51 (13%)
Frame = -1
Query: 302 RHVPVSLLKSVVFRQVMEIIAPDNNCSLHF-------HFLNNACQDTASDG 171
+HV + L FR I DN +LHF H ++ QDT SDG
Sbjct: 699 KHVDFTYLDDEKFRAT---IHDDNTFTLHFFNRHSPFHLISQFLQDTFSDG 746
>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 910
Score = 24.6 bits (51), Expect = 8.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = -2
Query: 394 LNLTVLESGLHSPIVTMSPISTSLKQGDR*TDMFLCRFSN 275
L+ + + L SP+ T++ + L G D+FL FSN
Sbjct: 6 LHESAIPKELDSPVTTIALYNNHLYFGTEGGDVFLYNFSN 45
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,898,877
Number of Sequences: 5004
Number of extensions: 39879
Number of successful extensions: 129
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 121
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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